Package org.anchoranalysis.plugin.points.bean.fitter

Class LinearLeastSquaresEllipsoidFitter

Object

org.anchoranalysis.bean.AnchorBean<B>

org.anchoranalysis.bean.initializable.InitializableBean<T,org.anchoranalysis.mpp.init.PointsInitialization>

org.anchoranalysis.mpp.bean.points.PointsBean<org.anchoranalysis.mpp.bean.points.fitter.PointsFitter>

org.anchoranalysis.mpp.bean.points.fitter.PointsFitter

org.anchoranalysis.plugin.points.bean.fitter.ConicFitterBase

org.anchoranalysis.plugin.points.bean.fitter.LinearLeastSquaresEllipsoidFitter

All Implemented Interfaces:

org.anchoranalysis.mpp.mark.CompatibleWithMark

public class LinearLeastSquaresEllipsoidFitter
extends ConicFitterBase

Fits an ellipsoid to points using a linear least squares approach

Specifically the approach of Li and Griffiths in 'Least Squares Ellipsoid Specific Fitting' (2004) is employed.

Some references

• generalized eigenvalues in wolfram
• ellipsoid_fit matlab function
• To convert back into normal ellipsoid form

Author:

Owen Feehan

Constructor Summary

Constructors

Constructor	Description
LinearLeastSquaresEllipsoidFitter()

Method Summary

Modifier and Type	Method	Description
void	fit(List<org.anchoranalysis.spatial.point.Point3f> points, org.anchoranalysis.mpp.mark.Mark mark, org.anchoranalysis.image.core.dimensions.Dimensions dimensions)
double	getMinRadius()
boolean	isCompatibleWith(org.anchoranalysis.mpp.mark.Mark testMark)
boolean	isSuppressZCovariance()
void	setMinRadius(double minRadius)
void	setSuppressZCovariance(boolean suppressZCovariance)

Methods inherited from class org.anchoranalysis.plugin.points.bean.fitter.ConicFitterBase

assignTo, getInputPointShift, getScaleRadii, getShell, getSubtractRadii, setInputPointShift, setScaleRadii, setShell, setSubtractRadii

Methods inherited from class org.anchoranalysis.bean.initializable.InitializableBean

getInitialization, getLogger, getPropertyInitializer, initialize, initializeRecursive, initRecursiveWithInitializer, isInitialized, onInitialization

Methods inherited from class org.anchoranalysis.bean.AnchorBean

checkMisconfigured, describeBean, describeChildren, duplicateBean, fields, findFieldsOfClass, getBeanName, getLocalPath, localise, toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Details

LinearLeastSquaresEllipsoidFitter

public LinearLeastSquaresEllipsoidFitter()

Method Details

isCompatibleWith

public boolean isCompatibleWith(org.anchoranalysis.mpp.mark.Mark testMark)

fit

public void fit(List<org.anchoranalysis.spatial.point.Point3f> points, org.anchoranalysis.mpp.mark.Mark mark, org.anchoranalysis.image.core.dimensions.Dimensions dimensions) throws org.anchoranalysis.mpp.bean.points.fitter.PointsFitterException

Specified by:

fit in class org.anchoranalysis.mpp.bean.points.fitter.PointsFitter

Throws:

org.anchoranalysis.mpp.bean.points.fitter.PointsFitterException

getMinRadius

public double getMinRadius()

setMinRadius

public void setMinRadius(double minRadius)

isSuppressZCovariance

public boolean isSuppressZCovariance()

setSuppressZCovariance

public void setSuppressZCovariance(boolean suppressZCovariance)