Index (anchor-plugin-points 1.0.0 API)

A C E F G H I L M O P R S T
All Classes and Interfaces|All Packages

A

applyCoefficientsToMark(DoubleMatrix2D, Mark, Dimensions) - Method in class org.anchoranalysis.plugin.points.bean.fitter.LinearLeastSquaresViaNormalEquationBase: Applies the calculated coefficients to the mark.
applyFitResultToMark(Ellipsoid, Dimensions, double) - Method in class org.anchoranalysis.plugin.points.bean.fitter.FitResult: Applies the fit result to an Ellipsoid mark.
applyRadiiSubtractScale(double, double) - Method in class org.anchoranalysis.plugin.points.bean.fitter.FitResult: Applies a subtraction and scaling to the radii of the ellipsoid.
assignTo(ConicFitterBase) - Method in class org.anchoranalysis.plugin.points.bean.fitter.ConicFitterBase: Copies fields in this (base) class to target.
atanHandlingNan(double) - Static method in class org.anchoranalysis.plugin.points.bean.fitter.EllipseStandardFormConverter: Calculates the arctangent, handling NaN values.
AxisRatioEllipsoid - Class in org.anchoranalysis.plugin.points.bean.feature: Calculates the axis ratio of an Ellipsoid.
AxisRatioEllipsoid() - Constructor for class org.anchoranalysis.plugin.points.bean.feature.AxisRatioEllipsoid

C

calculate(FeatureCalculationInput<FeatureInputSingleObject>) - Method in class org.anchoranalysis.plugin.points.bean.feature.EllipsoidBase
calculate(FeatureCalculationInput<FeatureInputSingleObject>) - Method in class org.anchoranalysis.plugin.points.bean.feature.Ellipticity
CalculateEllipseLeastSquares - Class in org.anchoranalysis.plugin.points.calculate.ellipse: Calculates the best-fit ellipse for an ObjectMask using linear least squares.
CalculateEllipseLeastSquares() - Constructor for class org.anchoranalysis.plugin.points.calculate.ellipse.CalculateEllipseLeastSquares: Creates a new instance of CalculateEllipseLeastSquares.
CalculateEllipsoidLeastSquares - Class in org.anchoranalysis.plugin.points.calculate.ellipsoid: Calculates the best-fit Ellipsoid for an object using linear least squares.
calculateWithEllipsoid(FeatureInputSingleObject, Ellipsoid) - Method in class org.anchoranalysis.plugin.points.bean.feature.AxisRatioEllipsoid
calculateWithEllipsoid(FeatureInputSingleObject, Ellipsoid) - Method in class org.anchoranalysis.plugin.points.bean.feature.EllipsoidBase: Calculates a feature value based on the fitted Ellipsoid.
calculateWithEllipsoid(FeatureInputSingleObject, Ellipsoid) - Method in class org.anchoranalysis.plugin.points.bean.feature.Ellipsoidicity
canEqual(Object) - Method in class org.anchoranalysis.plugin.points.bean.fitter.FitResult
canEqual(Object) - Method in class org.anchoranalysis.plugin.points.calculate.ellipse.CalculateEllipseLeastSquares
canEqual(Object) - Method in class org.anchoranalysis.plugin.points.calculate.ellipsoid.CalculateEllipsoidLeastSquares
centerPoint() - Method in class org.anchoranalysis.plugin.points.bean.fitter.EllipseStandardFormConverter: Gets the center point of the ellipse.
ConicFitterBase - Class in org.anchoranalysis.plugin.points.bean.fitter: Base class for conic fitters, providing common properties and methods.
ConicFitterBase() - Constructor for class org.anchoranalysis.plugin.points.bean.fitter.ConicFitterBase
convexHull2D(List<Point2i>) - Static method in class org.anchoranalysis.plugin.points.convexhull.ConvexHullUtilities: Apply a convex-hull algorithm to filter a set of points using the default minimum number of points.
convexHull2D(List<Point2i>, int) - Static method in class org.anchoranalysis.plugin.points.convexhull.ConvexHullUtilities: Apply a convex-hull algorithm to filter a set of points.
ConvexHull2D - Class in org.anchoranalysis.plugin.points.bean.convexhull: Sets particular voxels to high only if they exist on the convex-hull of the outline of a mask.
ConvexHull2D() - Constructor for class org.anchoranalysis.plugin.points.bean.convexhull.ConvexHull2D
ConvexHull3D - Class in org.anchoranalysis.plugin.points.bean.convexhull: Calculates a 3D convex hull from a binary mask.
ConvexHull3D() - Constructor for class org.anchoranalysis.plugin.points.bean.convexhull.ConvexHull3D
ConvexHullBase - Class in org.anchoranalysis.plugin.points.bean.convexhull: Base class for convex hull implementations.
ConvexHullBase() - Constructor for class org.anchoranalysis.plugin.points.bean.convexhull.ConvexHullBase
ConvexHullUtilities - Class in org.anchoranalysis.plugin.points.convexhull: Utility methods for calculating convex hulls on 2D points.
createDesignMatrix(List<Point3f>) - Method in class org.anchoranalysis.plugin.points.bean.fitter.LinearLeastSquaresViaNormalEquationBase: Creates the design matrix from the input points.
createDim() - Method in class org.anchoranalysis.plugin.points.bean.fitter.PointsFitterToMark: Creates and returns the Dimensions using the specified provider.
createFitResultFromMatrixAandCenter(DoubleMatrix2D, DoubleMatrix2D, boolean) - Static method in class org.anchoranalysis.plugin.points.bean.fitter.EllipsoidFitHelper: Creates a FitResult from the matrix A and center matrix.
createFromMask(Mask) - Method in class org.anchoranalysis.plugin.points.bean.convexhull.ConvexHullBase
createFromMask(Mask, Mask) - Method in class org.anchoranalysis.plugin.points.bean.convexhull.ConvexHull2D
createFromMask(Mask, Mask) - Method in class org.anchoranalysis.plugin.points.bean.convexhull.ConvexHull3D
createFromMask(Mask, Mask) - Method in class org.anchoranalysis.plugin.points.bean.convexhull.ConvexHullBase: Creates a convex hull from a mask and its outline.
createFromObjects(ObjectCollection) - Method in class org.anchoranalysis.plugin.points.bean.SplitContourAtSaddlePoints
createMarkEllipsoidLeastSquares(CheckedSupplier<List<Point3i>, CreateException>, Dimensions, boolean, double) - Static method in class org.anchoranalysis.plugin.points.calculate.ellipsoid.EllipsoidFactory: Creates a Ellipsoid using least-squares fitting to a supplied list of points.
createMarkEllipsoidLeastSquares(ObjectMask, Dimensions, boolean, double) - Static method in class org.anchoranalysis.plugin.points.calculate.ellipsoid.EllipsoidFactory: Creates a Ellipsoid using least-squares fitting to the points on the outline of an ObjectMask.
createObjects() - Method in class org.anchoranalysis.plugin.points.bean.fitter.PointsFitterToMark: Creates and returns the ObjectCollection using the specified provider.

E

EllipseStandardFormConverter - Class in org.anchoranalysis.plugin.points.bean.fitter: Extracts forms for 'standard form' representation of an ellipse from the coefficients for a 2nd order polynomial describing the ellipse.
EllipseStandardFormConverter(DoubleMatrix1D) - Constructor for class org.anchoranalysis.plugin.points.bean.fitter.EllipseStandardFormConverter: Creates a new EllipseStandardFormConverter and performs the conversion.
EllipsoidBase - Class in org.anchoranalysis.plugin.points.bean.feature: Base class for features that calculate properties of an Ellipsoid fitted to an object.
EllipsoidBase() - Constructor for class org.anchoranalysis.plugin.points.bean.feature.EllipsoidBase
EllipsoidFactory - Class in org.anchoranalysis.plugin.points.calculate.ellipsoid: Factory for creating Ellipsoid objects using least-squares fitting.
EllipsoidFitHelper - Class in org.anchoranalysis.plugin.points.bean.fitter: Helper class for fitting ellipsoids to point data.
Ellipsoidicity - Class in org.anchoranalysis.plugin.points.bean.feature: Calculates the ellipsoidicity of an object by fitting an Ellipsoid to it.
Ellipsoidicity() - Constructor for class org.anchoranalysis.plugin.points.bean.feature.Ellipsoidicity
Ellipticity - Class in org.anchoranalysis.plugin.points.bean.feature: Calculates the ellipticity of an ObjectMask (on the center of gravity slice if it's a z-stack).
Ellipticity() - Constructor for class org.anchoranalysis.plugin.points.bean.feature.Ellipticity
equals(Object) - Method in class org.anchoranalysis.plugin.points.bean.fitter.FitResult
equals(Object) - Method in class org.anchoranalysis.plugin.points.calculate.ellipse.CalculateEllipseLeastSquares
equals(Object) - Method in class org.anchoranalysis.plugin.points.calculate.ellipse.ObjectWithEllipse
equals(Object) - Method in class org.anchoranalysis.plugin.points.calculate.ellipsoid.CalculateEllipsoidLeastSquares
execute(FeatureInputSingleObject) - Method in class org.anchoranalysis.plugin.points.calculate.ellipse.CalculateEllipseLeastSquares
execute(FeatureInputSingleObject) - Method in class org.anchoranalysis.plugin.points.calculate.ellipsoid.CalculateEllipsoidLeastSquares

F

fit(List<Point3f>, Mark, Dimensions) - Method in class org.anchoranalysis.plugin.points.bean.fitter.LinearLeastSquaresEllipseFitter
fit(List<Point3f>, Mark, Dimensions) - Method in class org.anchoranalysis.plugin.points.bean.fitter.LinearLeastSquaresEllipsoidFitter
fit(List<Point3f>, Mark, Dimensions) - Method in class org.anchoranalysis.plugin.points.bean.fitter.LinearLeastSquaresViaNormalEquationBase
fit(List<Point3f>, Mark, Dimensions) - Method in class org.anchoranalysis.plugin.points.bean.fitter.Reference
fit(List<Point3f>, Mark, Dimensions) - Method in class org.anchoranalysis.plugin.points.bean.fitter.ReflectInAxesWithinDistance
FitPoints - Class in org.anchoranalysis.plugin.points.bean: A MarkProposer that fits points to a mark using a PointsProposer and a PointsFitter.
FitPoints() - Constructor for class org.anchoranalysis.plugin.points.bean.FitPoints
FitPointsFromObjects - Class in org.anchoranalysis.plugin.points.bean: A MarkCollectionProvider that fits points from objects to create marks.
FitPointsFromObjects() - Constructor for class org.anchoranalysis.plugin.points.bean.FitPointsFromObjects
fitPointsToMark(List<Point3f>, Mark, Dimensions) - Method in class org.anchoranalysis.plugin.points.bean.fitter.PointsFitterToMark: Fits a list of points to a mark using the specified points fitter.
FitResult - Class in org.anchoranalysis.plugin.points.bean.fitter: Represents the result of fitting an ellipsoid to a set of points.
FitResult() - Constructor for class org.anchoranalysis.plugin.points.bean.fitter.FitResult

G

get() - Method in class org.anchoranalysis.plugin.points.bean.FitPointsFromObjects
getCenterPoint() - Method in class org.anchoranalysis.plugin.points.bean.fitter.FitResult: The center point of the fitted ellipsoid.
getCenterPointX() - Method in class org.anchoranalysis.plugin.points.bean.fitter.EllipseStandardFormConverter: Gets the x-coordinate of the ellipse's center point.
getCenterPointY() - Method in class org.anchoranalysis.plugin.points.bean.fitter.EllipseStandardFormConverter: Gets the y-coordinate of the ellipse's center point.
getDimensions() - Method in class org.anchoranalysis.plugin.points.bean.fitter.PointsFitterToMark: Provides the Dimensions for the fitting operation.
getDistanceX() - Method in class org.anchoranalysis.plugin.points.bean.fitter.ReflectInAxesWithinDistance
getDistanceY() - Method in class org.anchoranalysis.plugin.points.bean.fitter.ReflectInAxesWithinDistance
getDistanceZ() - Method in class org.anchoranalysis.plugin.points.bean.fitter.ReflectInAxesWithinDistance
getId() - Method in class org.anchoranalysis.plugin.points.bean.fitter.Reference: The ID of the referenced PointsFitter.
getInputPointShift() - Method in class org.anchoranalysis.plugin.points.bean.fitter.ConicFitterBase: The shift to apply to input points before fitting.
getLogger() - Method in class org.anchoranalysis.plugin.points.bean.FitPoints: The logger for recording errors.
getMajorAxisAngle() - Method in class org.anchoranalysis.plugin.points.bean.fitter.EllipseStandardFormConverter: Gets the angle of the major axis in radians.
getMajorAxisSlope() - Method in class org.anchoranalysis.plugin.points.bean.fitter.EllipseStandardFormConverter: Gets the slope of the major axis.
getMark() - Method in class org.anchoranalysis.plugin.points.calculate.ellipse.ObjectWithEllipse: The best-fit ellipse for the object.
getMarkFactory() - Method in class org.anchoranalysis.plugin.points.bean.FitPointsFromObjects: The MarkFactory used to create new marks.
getMinNumberPoints() - Method in class org.anchoranalysis.plugin.points.bean.SplitContourAtSaddlePoints: If a contour has less than this number of points, we don't split it, and return it as-is
getMinNumPoints() - Method in class org.anchoranalysis.plugin.points.bean.fitter.PointsFitterToMark: The minimum number of points required for fitting.
getMinorAxisAngle() - Method in class org.anchoranalysis.plugin.points.bean.fitter.EllipseStandardFormConverter: Gets the angle of the minor axis in radians.
getMinorAxisSlope() - Method in class org.anchoranalysis.plugin.points.bean.fitter.EllipseStandardFormConverter: Gets the slope of the minor axis.
getMinRadius() - Method in class org.anchoranalysis.plugin.points.bean.fitter.LinearLeastSquaresEllipseFitter
getMinRadius() - Method in class org.anchoranalysis.plugin.points.bean.fitter.LinearLeastSquaresEllipsoidFitter
getNumberLoopPoints() - Method in class org.anchoranalysis.plugin.points.bean.SplitContourAtSaddlePoints
getObject() - Method in class org.anchoranalysis.plugin.points.calculate.ellipse.ObjectWithEllipse: The object mask.
getObjects() - Method in class org.anchoranalysis.plugin.points.bean.fitter.PointsFitterToMark: Provides the ObjectCollection to be used in the fitting process.
getPointsFitter() - Method in class org.anchoranalysis.plugin.points.bean.FitPoints: The PointsFitter used to fit points to a mark.
getPointsFitter() - Method in class org.anchoranalysis.plugin.points.bean.FitPointsFromObjects: The PointsFitterToMark used to fit points to marks.
getPointsFitter() - Method in class org.anchoranalysis.plugin.points.bean.fitter.PointsFitterToMark: The PointsFitter used to fit points to a mark.
getPointsFitter() - Method in class org.anchoranalysis.plugin.points.bean.fitter.ReflectInAxesWithinDistance
getPointsProposer() - Method in class org.anchoranalysis.plugin.points.bean.FitPoints: The PointsProposer used to generate points.
getRadiusX() - Method in class org.anchoranalysis.plugin.points.bean.fitter.FitResult: The radius of the ellipsoid along the X-axis.
getRadiusY() - Method in class org.anchoranalysis.plugin.points.bean.fitter.FitResult: The radius of the ellipsoid along the Y-axis.
getRadiusZ() - Method in class org.anchoranalysis.plugin.points.bean.fitter.FitResult: The radius of the ellipsoid along the Z-axis.
getRotMatrix() - Method in class org.anchoranalysis.plugin.points.bean.fitter.FitResult: The rotation matrix, which must be considered immutable to be used here.
getScaleRadii() - Method in class org.anchoranalysis.plugin.points.bean.fitter.ConicFitterBase: The scale factor to apply to the radii of the conic.
getSemiMajorAxis() - Method in class org.anchoranalysis.plugin.points.bean.fitter.EllipseStandardFormConverter: Gets the length of the semi-major axis.
getSemiMinorAxis() - Method in class org.anchoranalysis.plugin.points.bean.fitter.EllipseStandardFormConverter: Gets the length of the semi-minor axis.
getShell() - Method in class org.anchoranalysis.plugin.points.bean.fitter.ConicFitterBase: The shell thickness of the conic.
getSmoothingFactor() - Method in class org.anchoranalysis.plugin.points.bean.SplitContourAtSaddlePoints
getSubtractRadii() - Method in class org.anchoranalysis.plugin.points.bean.fitter.ConicFitterBase: The value to subtract from the radii of the conic.

H

hashCode() - Method in class org.anchoranalysis.plugin.points.bean.fitter.FitResult
hashCode() - Method in class org.anchoranalysis.plugin.points.calculate.ellipse.CalculateEllipseLeastSquares
hashCode() - Method in class org.anchoranalysis.plugin.points.calculate.ellipse.ObjectWithEllipse
hashCode() - Method in class org.anchoranalysis.plugin.points.calculate.ellipsoid.CalculateEllipsoidLeastSquares

I

imposeMinimumRadius(double) - Method in class org.anchoranalysis.plugin.points.bean.fitter.FitResult: Imposes a minimum radius on all axes of the ellipsoid.
isCompatibleWith(Mark) - Method in class org.anchoranalysis.plugin.points.bean.FitPoints
isCompatibleWith(Mark) - Method in class org.anchoranalysis.plugin.points.bean.fitter.LinearLeastSquaresEllipseFitter
isCompatibleWith(Mark) - Method in class org.anchoranalysis.plugin.points.bean.fitter.LinearLeastSquaresEllipsoidFitter
isCompatibleWith(Mark) - Method in class org.anchoranalysis.plugin.points.bean.fitter.Reference
isCompatibleWith(Mark) - Method in class org.anchoranalysis.plugin.points.bean.fitter.ReflectInAxesWithinDistance
isConvexHull() - Method in class org.anchoranalysis.plugin.points.bean.FitPointsFromObjects: If true, reduces the set of points by applying a convex-hull operation.
isErodeAtBoundary() - Method in class org.anchoranalysis.plugin.points.bean.convexhull.ConvexHullBase: Whether to erode the mask at the boundary before finding the contour.
isIgnoreFittingFailure() - Method in class org.anchoranalysis.plugin.points.bean.FitPointsFromObjects: If true, ignores fitting failures and continues processing.
isReportFitterErrors() - Method in class org.anchoranalysis.plugin.points.bean.FitPoints: Whether to report fitter errors.
isSuppressZ() - Method in class org.anchoranalysis.plugin.points.bean.feature.EllipsoidBase: If true, suppresses covariance in the z-direction.
isSuppressZCovariance() - Method in class org.anchoranalysis.plugin.points.bean.fitter.LinearLeastSquaresEllipsoidFitter

L

LinearLeastSquaresEllipseFitter - Class in org.anchoranalysis.plugin.points.bean.fitter: Fits a set of points to an ellipse using a linear least squares method.
LinearLeastSquaresEllipseFitter() - Constructor for class org.anchoranalysis.plugin.points.bean.fitter.LinearLeastSquaresEllipseFitter
LinearLeastSquaresEllipsoidFitter - Class in org.anchoranalysis.plugin.points.bean.fitter: Fits an ellipsoid to points using a linear least squares approach
LinearLeastSquaresEllipsoidFitter() - Constructor for class org.anchoranalysis.plugin.points.bean.fitter.LinearLeastSquaresEllipsoidFitter
LinearLeastSquaresViaNormalEquationBase - Class in org.anchoranalysis.plugin.points.bean.fitter: Base class for linear least squares fitting using the normal equation method.
LinearLeastSquaresViaNormalEquationBase() - Constructor for class org.anchoranalysis.plugin.points.bean.fitter.LinearLeastSquaresViaNormalEquationBase

M

minNumPoints() - Method in class org.anchoranalysis.plugin.points.bean.fitter.LinearLeastSquaresViaNormalEquationBase: Returns the minimum number of points required for fitting.

O

ObjectWithEllipse - Class in org.anchoranalysis.plugin.points.calculate.ellipse: A pair containing an ObjectMask and its corresponding best-fit Ellipse.
ObjectWithEllipse(ObjectMask, Ellipse) - Constructor for class org.anchoranalysis.plugin.points.calculate.ellipse.ObjectWithEllipse: Creates a new ObjectWithEllipse instance.
of(FeatureCalculationInput<FeatureInputSingleObject>, boolean) - Static method in class org.anchoranalysis.plugin.points.calculate.ellipsoid.CalculateEllipsoidLeastSquares: Calculates an Ellipsoid for the given input.
onInitialization(PointsInitialization) - Method in class org.anchoranalysis.plugin.points.bean.fitter.Reference
org.anchoranalysis.plugin.points.bean - package org.anchoranalysis.plugin.points.bean: Beans that fit or otherwise manipulate sets of points.
org.anchoranalysis.plugin.points.bean.convexhull - package org.anchoranalysis.plugin.points.bean.convexhull: Convex hull operations.
org.anchoranalysis.plugin.points.bean.feature - package org.anchoranalysis.plugin.points.bean.feature: Features related to points and fitting points to conics.
org.anchoranalysis.plugin.points.bean.fitter - package org.anchoranalysis.plugin.points.bean.fitter: Fitting geometric structures to points.
org.anchoranalysis.plugin.points.calculate.ellipse - package org.anchoranalysis.plugin.points.calculate.ellipse: CalculationPart related to fitting ellipses to points by least-squares.
org.anchoranalysis.plugin.points.calculate.ellipsoid - package org.anchoranalysis.plugin.points.calculate.ellipsoid: CalculationPart related to fitting ellipsoids to points by least-squares.
org.anchoranalysis.plugin.points.convexhull - package org.anchoranalysis.plugin.points.convexhull: Non-bean convex hull operations.

P

PointsFitterToMark - Class in org.anchoranalysis.plugin.points.bean.fitter: A bean for fitting points to a mark using a specified points fitter.
PointsFitterToMark() - Constructor for class org.anchoranalysis.plugin.points.bean.fitter.PointsFitterToMark
pointsOnAllOutlines(ObjectCollection) - Static method in class org.anchoranalysis.plugin.points.convexhull.ConvexHullUtilities: Get points on all outlines of a collection of objects.
pointsOnOutline(ObjectMask) - Static method in class org.anchoranalysis.plugin.points.convexhull.ConvexHullUtilities: Get points on the outline of a single object.
propose(VoxelizedMarkMemo, ProposerContext) - Method in class org.anchoranalysis.plugin.points.bean.FitPoints

R

Reference - Class in org.anchoranalysis.plugin.points.bean.fitter: A PointsFitter that references another PointsFitter by its ID.
Reference() - Constructor for class org.anchoranalysis.plugin.points.bean.fitter.Reference
ReflectInAxesWithinDistance - Class in org.anchoranalysis.plugin.points.bean.fitter: Reflects points in each axes if all points are within a certain distance from it
ReflectInAxesWithinDistance() - Constructor for class org.anchoranalysis.plugin.points.bean.fitter.ReflectInAxesWithinDistance

S

setCenterPoint(Point3d) - Method in class org.anchoranalysis.plugin.points.bean.fitter.FitResult: The center point of the fitted ellipsoid.
setConvexHull(boolean) - Method in class org.anchoranalysis.plugin.points.bean.FitPointsFromObjects: If true, reduces the set of points by applying a convex-hull operation.
setDimensions(DimensionsProvider) - Method in class org.anchoranalysis.plugin.points.bean.fitter.PointsFitterToMark: Provides the Dimensions for the fitting operation.
setDistanceX(double) - Method in class org.anchoranalysis.plugin.points.bean.fitter.ReflectInAxesWithinDistance
setDistanceY(double) - Method in class org.anchoranalysis.plugin.points.bean.fitter.ReflectInAxesWithinDistance
setDistanceZ(double) - Method in class org.anchoranalysis.plugin.points.bean.fitter.ReflectInAxesWithinDistance
setErodeAtBoundary(boolean) - Method in class org.anchoranalysis.plugin.points.bean.convexhull.ConvexHullBase: Whether to erode the mask at the boundary before finding the contour.
setId(String) - Method in class org.anchoranalysis.plugin.points.bean.fitter.Reference: The ID of the referenced PointsFitter.
setIgnoreFittingFailure(boolean) - Method in class org.anchoranalysis.plugin.points.bean.FitPointsFromObjects: If true, ignores fitting failures and continues processing.
setInputPointShift(float) - Method in class org.anchoranalysis.plugin.points.bean.fitter.ConicFitterBase: The shift to apply to input points before fitting.
setMarkFactory(MarkFactory) - Method in class org.anchoranalysis.plugin.points.bean.FitPointsFromObjects: The MarkFactory used to create new marks.
setMinNumberPoints(int) - Method in class org.anchoranalysis.plugin.points.bean.SplitContourAtSaddlePoints: If a contour has less than this number of points, we don't split it, and return it as-is
setMinNumPoints(int) - Method in class org.anchoranalysis.plugin.points.bean.fitter.PointsFitterToMark: The minimum number of points required for fitting.
setMinRadius(double) - Method in class org.anchoranalysis.plugin.points.bean.fitter.LinearLeastSquaresEllipseFitter
setMinRadius(double) - Method in class org.anchoranalysis.plugin.points.bean.fitter.LinearLeastSquaresEllipsoidFitter
setNumberLoopPoints(int) - Method in class org.anchoranalysis.plugin.points.bean.SplitContourAtSaddlePoints
setObjects(ObjectCollectionProvider) - Method in class org.anchoranalysis.plugin.points.bean.fitter.PointsFitterToMark: Provides the ObjectCollection to be used in the fitting process.
setPointsFitter(PointsFitter) - Method in class org.anchoranalysis.plugin.points.bean.FitPoints: The PointsFitter used to fit points to a mark.
setPointsFitter(PointsFitter) - Method in class org.anchoranalysis.plugin.points.bean.fitter.PointsFitterToMark: The PointsFitter used to fit points to a mark.
setPointsFitter(PointsFitter) - Method in class org.anchoranalysis.plugin.points.bean.fitter.ReflectInAxesWithinDistance
setPointsFitter(PointsFitterToMark) - Method in class org.anchoranalysis.plugin.points.bean.FitPointsFromObjects: The PointsFitterToMark used to fit points to marks.
setPointsProposer(PointsProposer) - Method in class org.anchoranalysis.plugin.points.bean.FitPoints: The PointsProposer used to generate points.
setRadiusX(double) - Method in class org.anchoranalysis.plugin.points.bean.fitter.FitResult: The radius of the ellipsoid along the X-axis.
setRadiusY(double) - Method in class org.anchoranalysis.plugin.points.bean.fitter.FitResult: The radius of the ellipsoid along the Y-axis.
setRadiusZ(double) - Method in class org.anchoranalysis.plugin.points.bean.fitter.FitResult: The radius of the ellipsoid along the Z-axis.
setReportFitterErrors(boolean) - Method in class org.anchoranalysis.plugin.points.bean.FitPoints: Whether to report fitter errors.
setRotMatrix(DoubleMatrix2D) - Method in class org.anchoranalysis.plugin.points.bean.fitter.FitResult: The rotation matrix, which must be considered immutable to be used here.
setScaleRadii(double) - Method in class org.anchoranalysis.plugin.points.bean.fitter.ConicFitterBase: The scale factor to apply to the radii of the conic.
setShell(double) - Method in class org.anchoranalysis.plugin.points.bean.fitter.ConicFitterBase: The shell thickness of the conic.
setSmoothingFactor(double) - Method in class org.anchoranalysis.plugin.points.bean.SplitContourAtSaddlePoints
setSubtractRadii(double) - Method in class org.anchoranalysis.plugin.points.bean.fitter.ConicFitterBase: The value to subtract from the radii of the conic.
setSuppressZ(boolean) - Method in class org.anchoranalysis.plugin.points.bean.feature.EllipsoidBase: If true, suppresses covariance in the z-direction.
setSuppressZCovariance(boolean) - Method in class org.anchoranalysis.plugin.points.bean.fitter.LinearLeastSquaresEllipsoidFitter
SplitContourAtSaddlePoints - Class in org.anchoranalysis.plugin.points.bean: Splits a 2D contour represented by an object-mask into several contours, splitting at "turn" points.
SplitContourAtSaddlePoints() - Constructor for class org.anchoranalysis.plugin.points.bean.SplitContourAtSaddlePoints

T

toString() - Method in class org.anchoranalysis.plugin.points.bean.fitter.FitResult
toString() - Method in class org.anchoranalysis.plugin.points.calculate.ellipse.ObjectWithEllipse

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