Index (anchor-test-image 0.2.1 API)

A B C D E F G H I L M O P R S T V W
All Classes All Packages

A

addExtension(String, String) - Static method in class org.anchoranalysis.test.image.stackwriter.ExtensionAdder: Adds a file extension to a filename.
ALL_SUPPORTED_VOXEL_TYPES - Static variable in class org.anchoranalysis.test.image.stackwriter.PNGTestBase: All possible voxel types that can be supported.
ALL_SUPPORTED_VOXEL_TYPES - Static variable in class org.anchoranalysis.test.image.stackwriter.StackWriterTestBase: All possible voxel types that can be supported.
areCSVFilesEqual(Path, Path, PrintStream) - Method in class org.anchoranalysis.test.image.csv.CSVComparer: Are two CSV files equal?
assertIdentical(String, String, Path) - Method in interface org.anchoranalysis.test.image.rasterwriter.comparison.ImageComparer: Asserts that two image-files being compared are identical as images.

B

BeanInstanceMapFixture - Class in org.anchoranalysis.test.image.io: Creates a BeanInstanceMap with useful entries for testing, and associates it with bean creation.

C

carGrayscale16Bit() - Method in class org.anchoranalysis.test.image.load.CarImageLoader: Loads and returns the 16-bit grayscale image of a car.
carGrayscale16BitAsEnergy() - Method in class org.anchoranalysis.test.image.load.CarImageLoader: Loads the 16-bit grayscale image of a car and wraps it in an EnergyStackWithoutParameters.
carGrayscale8Bit() - Method in class org.anchoranalysis.test.image.load.CarImageLoader: Loads and returns the 8-bit grayscale image of a car.
carGrayscale8BitAsEnergy() - Method in class org.anchoranalysis.test.image.load.CarImageLoader: Loads the 8-bit grayscale image of a car and wraps it in an EnergyStackWithoutParameters.
CarImageLoader - Class in org.anchoranalysis.test.image.load: Loads some images of a car.
CarImageLoader() - Constructor for class org.anchoranalysis.test.image.load.CarImageLoader
carRGB() - Method in class org.anchoranalysis.test.image.load.CarImageLoader: Loads and returns the RGB image of a car.
carRGBAsEnergy() - Method in class org.anchoranalysis.test.image.load.CarImageLoader: Loads the RGB image of a car and wraps it in an EnergyStackWithoutParameters.
ChannelFixture - Class in org.anchoranalysis.test.image: Creates a Channel to use in tests.
ChannelFixture() - Constructor for class org.anchoranalysis.test.image.ChannelFixture
ChannelFixture(boolean) - Constructor for class org.anchoranalysis.test.image.ChannelFixture
ChannelFixture.IntensityFunction - Interface in org.anchoranalysis.test.image: Functional interface for creating intensity values for a given location.
ChannelSpecification - Class in org.anchoranalysis.test.image.stackwriter: Specifies a type and number of channels in a stack.
ChannelSpecification(VoxelDataType, int, boolean) - Constructor for class org.anchoranalysis.test.image.stackwriter.ChannelSpecification
check(T) - Static method in class org.anchoranalysis.test.image.io.BeanInstanceMapFixture: Checks if a bean has all necessary items, throwing a run-time exception if it does not.
circleAt(Point2d, int) - Static method in class org.anchoranalysis.test.image.object.CircleObjectFixture: Creates a single circular mask at a particular center point and radius.
CircleObjectFixture - Class in org.anchoranalysis.test.image.object: Creates object-masks that are circles in different ways
compareExplicitDirectoryToTest(Path, String) - Static method in class org.anchoranalysis.test.image.DualComparerFactory: Compares an explicit directory to a directory in Maven's test/resources.
compareTemporaryDirectoryToTest(Path, Optional<String>, String) - Static method in class org.anchoranalysis.test.image.DualComparerFactory: Compares a directory in a temporary-folder to a directory in Maven's test/resources.
compareTwoBinaryFiles(String) - Method in class org.anchoranalysis.test.image.DualComparer: Compare two binary-files.
compareTwoCsvFiles(String, CSVComparer, PrintStream) - Method in class org.anchoranalysis.test.image.DualComparer: Compare two CSV files using a specified comparer.
compareTwoImages(String) - Method in class org.anchoranalysis.test.image.DualComparer: Compare two images that have an identical path, but in two different test loaders.
compareTwoImages(String, String) - Method in class org.anchoranalysis.test.image.io.TestLoaderImage: Compare two images that are located on the file system in the same test-folder
compareTwoImages(String, String, boolean) - Method in class org.anchoranalysis.test.image.DualComparer: Compare two images with different paths, but in two different test loaders.
compareTwoImages(TestLoaderImage, String, TestLoaderImage, String, boolean) - Static method in class org.anchoranalysis.test.image.io.TestLoaderImage: Compare two images that are located on the file system (possibly in different test folders)
compareTwoObjectCollections(String) - Method in class org.anchoranalysis.test.image.DualComparer: Compare two object-mask-collections.
compareTwoObjectCollections(String, String) - Method in class org.anchoranalysis.test.image.io.TestLoaderImage: Compare two obj-mask-collection that are located on the file system in the test-folder
compareTwoSubdirectories(String) - Method in class org.anchoranalysis.test.image.DualComparer: Compare two subdirectories that have an identical path, but in two different test loaders.
compareTwoSubdirectoriesInLoader(TestLoader, String, String) - Static method in class org.anchoranalysis.test.image.DualComparerFactory: Compares two subdirectories within the same TestLoader.
compareTwoSubdirectoriesInLoader(TestLoader, String, TestLoader, String) - Static method in class org.anchoranalysis.test.image.DualComparerFactory: Compares two subdirectories from different TestLoaders.
compareTwoXmlDocuments(String) - Method in class org.anchoranalysis.test.image.DualComparer: Compare two XML documents.
ComparisonPlan - Class in org.anchoranalysis.test.image.rasterwriter.comparison: A plan on which comparisons to execute for a test.
ComparisonPlan(boolean, Optional<ImageFileFormat>, boolean) - Constructor for class org.anchoranalysis.test.image.rasterwriter.comparison.ComparisonPlan: Creates a plan for particular settings.
ComparisonPlan(boolean, Optional<ImageFileFormat>, boolean, String) - Constructor for class org.anchoranalysis.test.image.rasterwriter.comparison.ComparisonPlan: Creates a plan for particular settings - and which copies any missing images to a particular directory.
copyFromPath1ToPath2(String) - Method in class org.anchoranalysis.test.image.DualComparer: Copies a file from its path in the first loader, to its path in the second loader.
create(boolean) - Static method in class org.anchoranalysis.test.image.MaskFixture: Creates the Mask with the default corner and no assigned resolution.
create(boolean, boolean) - Static method in class org.anchoranalysis.test.image.EnergyStackFixture: Creates an energy-stack with default settings.
create(boolean, boolean, boolean, boolean) - Static method in class org.anchoranalysis.test.image.EnergyStackFixture: Creates the energy-stack to use.
create(boolean, Optional<Resolution>) - Static method in class org.anchoranalysis.test.image.MaskFixture: Creates the Mask with the default corner and a particular resolution.
create(Point3i, boolean) - Static method in class org.anchoranalysis.test.image.MaskFixture: Creates the Mask with a particular corner and no assigned resolution.
create(Point3i, boolean, Optional<Resolution>) - Static method in class org.anchoranalysis.test.image.MaskFixture: Creates the Mask with a particular corner and a particular resolution.
create(ChannelSpecification, Extent) - Method in class org.anchoranalysis.test.image.StackFixture: Creates a stack with a particular number of the channels of particular size.
create1() - Method in class org.anchoranalysis.test.image.object.CutOffCornersObjectFixture: Create the first object.
create2() - Method in class org.anchoranalysis.test.image.object.CutOffCornersObjectFixture: Create the second object.
create3() - Method in class org.anchoranalysis.test.image.object.CutOffCornersObjectFixture: Create the third object.
createAll() - Method in class org.anchoranalysis.test.image.object.CutOffCornersObjectFixture: Creates all three objects.
createChannel(Extent, ChannelFixture.IntensityFunction, VoxelDataType) - Method in class org.anchoranalysis.test.image.ChannelFixture: Creates a channel with specified extent, intensity function, and voxel data type.
createComparer(Path, String) - Method in class org.anchoranalysis.test.image.rasterwriter.comparison.ComparisonPlan: Creates the ImageComparer to use to compare between images loaded in a temporary-directory and saved-images.
createComparer(Path, String) - Static method in class org.anchoranalysis.test.image.stackwriter.SavedFiles: Creates a comparer between a directory and saved-files in a directory in the resources.
createLoader(String) - Static method in class org.anchoranalysis.test.image.stackwriter.SavedFiles: Creates a loader for reading from a particular set of saved-files in a directory in the resources.
createSegmenter() - Method in class org.anchoranalysis.test.image.segment.InstanceSegmentationTestBase: Creates the segmentation implementation to be tested.
createWriter() - Method in class org.anchoranalysis.test.image.stackwriter.StackWriterTestBase: Creates the StackWriter to be tested.
CSVComparer - Class in org.anchoranalysis.test.image.csv: Compares two CSV files to determine if they are identical or not.
CSVComparer(String, boolean, int, boolean, boolean) - Constructor for class org.anchoranalysis.test.image.csv.CSVComparer
CutOffCorners - Class in org.anchoranalysis.test.image.object: The bounding box is filled apart from cuboids cut out of the corners
CutOffCorners(int, int, Extent) - Constructor for class org.anchoranalysis.test.image.object.CutOffCorners: Constructs a CutOffCorners pattern.
CutOffCornersObjectFixture - Class in org.anchoranalysis.test.image.object: Creates one or more objects that are otherwise rectangles with on values, but with corner voxels as off.
CutOffCornersObjectFixture() - Constructor for class org.anchoranalysis.test.image.object.CutOffCornersObjectFixture: Create without any check on dimensions.
CutOffCornersObjectFixture(Dimensions) - Constructor for class org.anchoranalysis.test.image.object.CutOffCornersObjectFixture: Create with any check on dimensions.

D

depth(boolean) - Static method in class org.anchoranalysis.test.image.MaskFixture: The **depth** of the mask that will be created.
diffModulo(int, int, int) - Static method in class org.anchoranalysis.test.image.ChannelFixture: Calculates intensity as the difference of coordinates modulo 256.
directory - Variable in class org.anchoranalysis.test.image.stackwriter.StackWriterTestBase: A temporary directory created for each test method.
doesPathExist(String) - Method in class org.anchoranalysis.test.image.io.TestLoaderImage: Checks if a test path exists.
DualComparer - Class in org.anchoranalysis.test.image: Allows for comparison of objects that exist on different test loaders
DualComparer(TestLoader, TestLoader) - Constructor for class org.anchoranalysis.test.image.DualComparer: Creates a new DualComparer instance.
DualComparerFactory - Class in org.anchoranalysis.test.image: Factory for creating DualComparer instances to compare directories.

E

EnergyStackFixture - Class in org.anchoranalysis.test.image: A fixture for creating EnergyStack objects for testing purposes.
ensureImageMetadataReader() - Static method in class org.anchoranalysis.test.image.io.BeanInstanceMapFixture: Ensure a ImageMetadataReader instance exists in the underlying BeanInstanceMap.
ensureInterpolator() - Static method in class org.anchoranalysis.test.image.io.BeanInstanceMapFixture: Ensure a default Interpolator instance exists in the underlying BeanInstanceMap.
ensureInterpolator(Interpolator) - Static method in class org.anchoranalysis.test.image.io.BeanInstanceMapFixture: Ensure a specific Interpolator instance exists in the underlying BeanInstanceMap.
ensureStackDisplayer() - Static method in class org.anchoranalysis.test.image.io.BeanInstanceMapFixture: Ensure a StackDisplayer instance exists in the underlying BeanInstanceMap.
ensureStackReader() - Static method in class org.anchoranalysis.test.image.io.BeanInstanceMapFixture: Ensure a StackReader instance exists in the underlying BeanInstanceMap.
ensureStackWriter(boolean) - Static method in class org.anchoranalysis.test.image.io.BeanInstanceMapFixture: Ensure a StackWriter instance exists in the underlying BeanInstanceMap.
equals(Object) - Method in class org.anchoranalysis.test.image.rasterwriter.comparison.ComparisonPlan
equals(Object) - Method in class org.anchoranalysis.test.image.stackwriter.ChannelSpecification
ExtensionAdder - Class in org.anchoranalysis.test.image.stackwriter: Utility class for adding file extensions to filenames.
EXTENT_IDENTIFIER - Static variable in class org.anchoranalysis.test.image.stackwriter.StackTester: A constant identifier used to represent a small extent in file names.

F

FourChannelStackTester - Class in org.anchoranalysis.test.image.stackwriter: Helper methods to test a RasterWriter on stacks with between 1 and 4 channels.
FourChannelStackTester(StackTester, ImageComparer, boolean) - Constructor for class org.anchoranalysis.test.image.stackwriter.FourChannelStackTester: Creates for a tester and comparer.

G

getChannelVoxelType() - Method in class org.anchoranalysis.test.image.stackwriter.ChannelSpecification: Default data-type for all channels in the stack if not otherwise specified.
getDirectory() - Method in class org.anchoranalysis.test.image.WriteIntoDirectory: The directory in which stacks and other outputs are written.
getDirectoryPathToCopyMissingImagesTo() - Method in class org.anchoranalysis.test.image.rasterwriter.comparison.ComparisonPlan
getFormatVoxelwiseCompare() - Method in class org.anchoranalysis.test.image.rasterwriter.comparison.ComparisonPlan: The file-format to use for the voxel-wise comparison (if it's activated).
getLoader() - Method in class org.anchoranalysis.test.image.io.TestLoaderImage: Delegate loader (for non image-related loading)
getLoader1() - Method in class org.anchoranalysis.test.image.DualComparer: The first loader.
getLoader2() - Method in class org.anchoranalysis.test.image.DualComparer: The second loader.
getNumberChannels() - Method in class org.anchoranalysis.test.image.stackwriter.ChannelSpecification: How many channels in the stack?

H

hashCode() - Method in class org.anchoranalysis.test.image.rasterwriter.comparison.ComparisonPlan
hashCode() - Method in class org.anchoranalysis.test.image.stackwriter.ChannelSpecification
height() - Static method in class org.anchoranalysis.test.image.MaskFixture: The **height** of the mask that will be created.

I

identiferFor(ChannelSpecification, boolean, String, boolean) - Static method in class org.anchoranalysis.test.image.stackwriter.IdentifierHelper: Builds an identifier for particular properties.
IdentifierHelper - Class in org.anchoranalysis.test.image.stackwriter: Builds an identifier (a filename without extension) for a saved-raster corresponding to certain properties.
ImageComparer - Interface in org.anchoranalysis.test.image.rasterwriter.comparison: Base class for a method comparing two image files.
InputOutputContextFixture - Class in org.anchoranalysis.test.image: A fixture for creating InputOutputContext instances for testing purposes.
INSTANCE - Static variable in class org.anchoranalysis.test.image.ResolutionFixture: A pre-created Resolution instance for use in tests.
InstanceSegmentationTestBase - Class in org.anchoranalysis.test.image.segment: Base class for testing implementations of SegmentStackIntoObjectsPooled.
InstanceSegmentationTestBase() - Constructor for class org.anchoranalysis.test.image.segment.InstanceSegmentationTestBase
isBytewiseCompare() - Method in class org.anchoranalysis.test.image.rasterwriter.comparison.ComparisonPlan
isMakeRGB() - Method in class org.anchoranalysis.test.image.stackwriter.ChannelSpecification: If true, the the RGB-flag is set on the created stack, if false it is not.
isPixelOn(int, int, int) - Method in class org.anchoranalysis.test.image.object.CutOffCorners
isPixelOn(int, int, int) - Method in interface org.anchoranalysis.test.image.object.VoxelPattern: Determines if a voxel at the given coordinates is "on" according to the pattern.
isSkipComparisonForRGB() - Method in class org.anchoranalysis.test.image.rasterwriter.comparison.ComparisonPlan

L

LARGE_2D - Static variable in class org.anchoranalysis.test.image.ChannelFixture: Large 2D extent for testing.
LARGE_3D - Static variable in class org.anchoranalysis.test.image.ChannelFixture: Large 3D extent for testing.

M

maskExtent(boolean) - Static method in class org.anchoranalysis.test.image.MaskFixture: The **size** across multiple dimensions of the mask that will be created.
MaskFixture - Class in org.anchoranalysis.test.image: Creates two or three-dimensional Masks for tests.
MEDIUM_2D - Static variable in class org.anchoranalysis.test.image.ChannelFixture: Medium 2D extent for testing.
MEDIUM_3D - Static variable in class org.anchoranalysis.test.image.ChannelFixture: Medium 3D extent for testing.
modelDirectory() - Method in class org.anchoranalysis.test.image.load.CarImageLoader: Returns the root directory path for the model files.
multModulo(int, int, int) - Static method in class org.anchoranalysis.test.image.ChannelFixture: Calculates intensity as the product of coordinates modulo 256.

O

openChannelFromFilePath(Path) - Method in class org.anchoranalysis.test.image.io.TestLoaderImage: Opens a channel from a file path.
openChannelFromTestPath(String) - Method in class org.anchoranalysis.test.image.io.TestLoaderImage: Opens a channel from a test path.
openLargestObjectFrom(String) - Method in class org.anchoranalysis.test.image.object.TestLoaderObjects: Opens the largest object from an image stack identified by a suffix.
openObjectsFromFilePath(Path) - Method in class org.anchoranalysis.test.image.io.TestLoaderImage: Opens an obj-mask-collection from a path to a file
openObjectsFromTestPath(String) - Method in class org.anchoranalysis.test.image.io.TestLoaderImage: Opens an object collection from a test path.
openStackFromFilePath(Path) - Method in class org.anchoranalysis.test.image.io.TestLoaderImage: Opens a stack from a file path.
openStackFromTestPath(String) - Method in class org.anchoranalysis.test.image.io.TestLoaderImage: Opens a stack from a test path.
org.anchoranalysis.test.image - package org.anchoranalysis.test.image: Testing utilities and fixtures with no greater downstream dependency than anchor-image-io or anchor-io-bioformats or anchor-imagej.
org.anchoranalysis.test.image.csv - package org.anchoranalysis.test.image.csv: Comparing two CSV files for equality (by a certain definition).
org.anchoranalysis.test.image.io - package org.anchoranalysis.test.image.io: Utilities for testing-related reading and writing to the filesystem.
org.anchoranalysis.test.image.load - package org.anchoranalysis.test.image.load: Load test image data.
org.anchoranalysis.test.image.object - package org.anchoranalysis.test.image.object: Fixtures for creating object-masks.
org.anchoranalysis.test.image.rasterwriter.comparison - package org.anchoranalysis.test.image.rasterwriter.comparison: Different ways for comparing images.
org.anchoranalysis.test.image.segment - package org.anchoranalysis.test.image.segment: Fixtures or other helper classes for testing image segmentation algorithms.
org.anchoranalysis.test.image.stackwriter - package org.anchoranalysis.test.image.stackwriter: Fixtures for testing StackWriter and related classes.
outputter(Optional<Path>) - Static method in class org.anchoranalysis.test.image.io.OutputterFixture: Creates an Outputter instance with optionally a path to a temporary directory for outtputting files.
outputter(OutputManager, OutputEnabledRules) - Static method in class org.anchoranalysis.test.image.io.OutputterFixture: Creates an Outputter instance with a specified OutputManager and OutputEnabledRules.
outputterChecked(Optional<Path>) - Static method in class org.anchoranalysis.test.image.io.OutputterFixture: Creates an OutputterChecked instance with optionally a path to a temporary directory for outputting files.
OutputterFixture - Class in org.anchoranalysis.test.image.io: Utility class for creating Outputter instances for testing purposes.

P

performTest(VoxelDataType[], int, boolean, Optional<VoxelDataType>, Optional<ImageComparer>) - Method in class org.anchoranalysis.test.image.stackwriter.StackTester: Performs a test on stack writing for specified channel types, number of channels, RGB setting, and optional forced first channel type.
performTest(VoxelDataType[], int, boolean, Optional<ImageComparer>) - Method in class org.anchoranalysis.test.image.stackwriter.StackTester: Performs a test on stack writing for specified channel types, number of channels, and RGB setting.
performTest(ChannelSpecification, Optional<VoxelDataType>, Optional<ImageComparer>) - Method in class org.anchoranalysis.test.image.stackwriter.StackTester: Performs a test on stack writing for a specified channel specification and optional forced first channel type.
performTest(ChannelSpecification, Optional<ImageComparer>) - Method in class org.anchoranalysis.test.image.stackwriter.StackTester: Performs a test on stack writing for a specified channel specification.
PNGTestBase - Class in org.anchoranalysis.test.image.stackwriter: For testing all StackWriters that create PNGs.
PNGTestBase() - Constructor for class org.anchoranalysis.test.image.stackwriter.PNGTestBase

R

removeStackWriter() - Static method in class org.anchoranalysis.test.image.io.BeanInstanceMapFixture: Removes any StackWriter that may exist in the underlying BeanInstanceMap.
ResolutionFixture - Class in org.anchoranalysis.test.image: Provides a pre-created Resolution instance for use in tests.
resolveTestPath(String) - Method in class org.anchoranalysis.test.image.io.TestLoaderImage: Resolves a test path to an actual file system path.

S

SavedFiles - Class in org.anchoranalysis.test.image.stackwriter: Access previously saved-files in resources.
setup() - Method in class org.anchoranalysis.test.image.segment.InstanceSegmentationTestBase: Sets up the test environment before each test.
SMALL_2D - Static variable in class org.anchoranalysis.test.image.ChannelFixture: Small 2D extent for testing.
SMALL_3D - Static variable in class org.anchoranalysis.test.image.ChannelFixture: Small 3D extent for testing.
StackFixture - Class in org.anchoranalysis.test.image: Creates stacks of 1 or more channels using ChannelFixture.
StackFixture() - Constructor for class org.anchoranalysis.test.image.StackFixture
StackFixture(Optional<VoxelDataType>) - Constructor for class org.anchoranalysis.test.image.StackFixture: Create with a voxel-type for the first channel.
stackGrayscale() - Method in class org.anchoranalysis.test.image.segment.InstanceSegmentationTestBase: Provides the grayscale stack to be tested.
stackRGB() - Method in class org.anchoranalysis.test.image.segment.InstanceSegmentationTestBase: Provides the RGB stack to be tested.
StackTester - Class in org.anchoranalysis.test.image.stackwriter: A utility class for testing stack writers by writing stacks and optionally comparing them.
StackTester(StackWriter, Path, String, boolean) - Constructor for class org.anchoranalysis.test.image.stackwriter.StackTester
StackWriterTestBase - Class in org.anchoranalysis.test.image.stackwriter: Base class for testing various implementations of StackWriter.
StackWriterTestBase(ImageFileFormat, boolean, ComparisonPlan) - Constructor for class org.anchoranalysis.test.image.stackwriter.StackWriterTestBase
successiveCircles(int, Point2d, int, Point2d, double) - Static method in class org.anchoranalysis.test.image.object.CircleObjectFixture: Creates several successive circles whose center is incrementally shifted.
sumModulo(int, int, int) - Static method in class org.anchoranalysis.test.image.ChannelFixture: Calculates intensity as the sum of coordinates modulo 256.

T

targetBox() - Method in class org.anchoranalysis.test.image.segment.InstanceSegmentationTestBase: The bounding-box we use to set an area where we expect segments to reside.
tester - Variable in class org.anchoranalysis.test.image.stackwriter.StackWriterTestBase: Performs the tests.
testFourChannels() - Method in class org.anchoranalysis.test.image.stackwriter.FourChannelStackTester: Tests a stack with four-channels of unsigned 8-bit data type.
testFourChannels(VoxelDataType[]) - Method in class org.anchoranalysis.test.image.stackwriter.FourChannelStackTester: Tests a stack with four-channels of specified types
testGrayscale8Bit() - Method in class org.anchoranalysis.test.image.segment.InstanceSegmentationTestBase: Tests the segmentation on a grayscale 8-bit image.
TestLoaderImage - Class in org.anchoranalysis.test.image.io: A test loader for image-related operations, providing methods to open and compare images and object collections.
TestLoaderImage(TestLoader) - Constructor for class org.anchoranalysis.test.image.io.TestLoaderImage: Constructs a TestLoaderImage with a given TestLoader.
TestLoaderImage(TestLoader, StackReader) - Constructor for class org.anchoranalysis.test.image.io.TestLoaderImage
TestLoaderObjects - Class in org.anchoranalysis.test.image.object: A utility class for loading and processing object masks in test scenarios.
TestLoaderObjects(TestLoaderImage) - Constructor for class org.anchoranalysis.test.image.object.TestLoaderObjects
TestLoaderObjects(TestLoader) - Constructor for class org.anchoranalysis.test.image.object.TestLoaderObjects: Constructs a TestLoaderObjects with a given TestLoader.
testRGB() - Method in class org.anchoranalysis.test.image.segment.InstanceSegmentationTestBase: Tests the segmentation on an RGB image.
testSingleChannel() - Method in class org.anchoranalysis.test.image.stackwriter.FourChannelStackTester: Tests the creation of a single-channel stack of unsigned 8-bit data type with the RGB flag off.
testSingleChannel(VoxelDataType) - Method in class org.anchoranalysis.test.image.stackwriter.FourChannelStackTester: Tests the creation of a single-channel stack of specified data type with the RGB flag off.
testSingleChannel(VoxelDataType[]) - Method in class org.anchoranalysis.test.image.stackwriter.FourChannelStackTester: Tests the creation of a single-channel stack of specified data types with the RGB flag off.
testSingleChannelRGB() - Method in class org.anchoranalysis.test.image.stackwriter.FourChannelStackTester: Tests the creation of a single-channel stack of unsigned 8-bit data type with the RGB flag on, which should typically produce an exception.
testThreeChannelsHeterogeneous() - Method in class org.anchoranalysis.test.image.stackwriter.FourChannelStackTester: Tests the creation of a three-channel stack of heterogeneous channel types.
testThreeChannelsRGB() - Method in class org.anchoranalysis.test.image.stackwriter.FourChannelStackTester: Tests the creation of a three-channel stack of unsigned 8-bit data type with the rgb-flag set to true.
testThreeChannelsRGB(VoxelDataType) - Method in class org.anchoranalysis.test.image.stackwriter.FourChannelStackTester: Tests the creation of a three-channel stack of specified data type with the rgb-flag set to true.
testThreeChannelsRGB(VoxelDataType[]) - Method in class org.anchoranalysis.test.image.stackwriter.FourChannelStackTester: Tests the creation of a three-channel stack of specified data types with the rgb-flag set to true.
testThreeChannelsSeparate() - Method in class org.anchoranalysis.test.image.stackwriter.FourChannelStackTester: Tests the creation of a three-channel stack of unsigned 8-bit data type with the rgb-flag set to false.
testThreeChannelsSeparate(VoxelDataType[]) - Method in class org.anchoranalysis.test.image.stackwriter.FourChannelStackTester: Tests the creation of a three-channel stack of specified data types with the rgb-flag set to false.
testTwoChannels() - Method in class org.anchoranalysis.test.image.stackwriter.FourChannelStackTester: Tests the creation of a two-channel stack of unsigned 8-bit data type.
testTwoChannels(VoxelDataType[]) - Method in class org.anchoranalysis.test.image.stackwriter.FourChannelStackTester: Tests the creation of a two-channel stack of specified data types.
TiffTestBase - Class in org.anchoranalysis.test.image.stackwriter: For testing all StackWriters that create TIFFs.
TiffTestBase() - Constructor for class org.anchoranalysis.test.image.stackwriter.TiffTestBase
toString() - Method in class org.anchoranalysis.test.image.rasterwriter.comparison.ComparisonPlan
toString() - Method in class org.anchoranalysis.test.image.stackwriter.ChannelSpecification

V

valueFor(int, int, int) - Method in interface org.anchoranalysis.test.image.ChannelFixture.IntensityFunction: Calculates the intensity value for given coordinates.
valueFor(Point3i) - Method in interface org.anchoranalysis.test.image.ChannelFixture.IntensityFunction: Calculates the intensity value for a given point.
VoxelPattern - Interface in org.anchoranalysis.test.image.object: Defines a pattern of voxels in a 3D space.

W

width() - Static method in class org.anchoranalysis.test.image.MaskFixture: The **width** of the mask that will be created.
withLogger(Logger) - Static method in class org.anchoranalysis.test.image.InputOutputContextFixture: Creates an InputOutputContext with a specified logger.
withSuppressedLogger() - Static method in class org.anchoranalysis.test.image.InputOutputContextFixture: Creates an InputOutputContext with a suppressed logger.
withSuppressedLogger(Path) - Static method in class org.anchoranalysis.test.image.InputOutputContextFixture: Creates an InputOutputContext with a suppressed logger and a specified model directory.
writeChannel(String, Channel) - Method in class org.anchoranalysis.test.image.WriteIntoDirectory: Writes a Channel to the output directory.
WriteIntoDirectory - Class in org.anchoranalysis.test.image: Writes one or more stacks/objects/channels into a directory during testing.
WriteIntoDirectory(Path) - Constructor for class org.anchoranalysis.test.image.WriteIntoDirectory: Creates a new WriteIntoDirectory instance with directory printing enabled.
WriteIntoDirectory(Path, boolean) - Constructor for class org.anchoranalysis.test.image.WriteIntoDirectory
writeList(String, List<DisplayStack>, boolean) - Method in class org.anchoranalysis.test.image.WriteIntoDirectory: Writes a list of display-stacks.
writeObject(String, ObjectMask) - Method in class org.anchoranalysis.test.image.WriteIntoDirectory: Writes an ObjectMask to the output directory.
writeObjects(String, ObjectCollection) - Method in class org.anchoranalysis.test.image.WriteIntoDirectory: Writes the outline of objects on a blank RGB image, inferring dimensions of the image to center the object.
writeObjects(String, ObjectCollection, Stack) - Method in class org.anchoranalysis.test.image.WriteIntoDirectory: Writes the outline of objects on a background.
writeStack(String, DisplayStack) - Method in class org.anchoranalysis.test.image.WriteIntoDirectory: Writes a DisplayStack to the output directory.
writeVoxels(String, Voxels<UnsignedByteBuffer>) - Method in class org.anchoranalysis.test.image.WriteIntoDirectory: Writes Voxels to the output directory.

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