1. org
   1. org.bdgenomics
      1. org.bdgenomics.adam
         1. org.bdgenomics.adam.cli
            1. (class)About
            2. (object)(class)ADAM2Fasta
            3. (class)ADAM2FastaArgs
            4. (object)(class)ADAM2Fastq
            5. (class)ADAM2FastqArgs
            6. (object)(class)ADAM2Vcf
            7. (class)ADAM2VcfArgs
            8. (object)(class)ADAMMain
            9. (class)ADAMModule
            10. (object)(class)AlleleCount
            11. (class)AlleleCountArgs
            12. (object)
                AlleleCountHelper
            13. (object)(class)CalculateDepth
            14. (class)CalculateDepthArgs
            15. (case class)CommandGroup
            16. (object)(class)CountContigKmers
            17. (class)CountContigKmersArgs
            18. (object)(class)CountReadKmers
            19. (class)CountReadKmersArgs
            20. (trait)DictionaryCommand
            21. (object)(class)Fasta2ADAM
            22. (class)Fasta2ADAMArgs
            23. (object)(class)FlagStat
            24. (class)FlagStatArgs
            25. (object)(class)Flatten
            26. (class)FlattenArgs
            27. (object)(class)Fragments2Reads
            28. (class)Fragments2ReadsArgs
            29. (object)(class)ListDict
            30. (class)ListDictArgs
            31. (object)(class)MergeShards
            32. (class)MergeShardsArgs
            33. (object)(class)PrintADAM
            34. (class)PrintADAMArgs
            35. (object)(class)Reads2Coverage
            36. (class)Reads2CoverageArgs
            37. (object)(class)Reads2Fragments
            38. (class)Reads2FragmentsArgs
            39. (object)(class)Transform
            40. (class)TransformArgs
            41. (object)(class)TransformFeatures
            42. (class)TransformFeaturesArgs
            43. (object)(class)Vcf2ADAM
            44. (class)Vcf2ADAMArgs
            45. (object)(class)VcfAnnotation2ADAM
            46. (class)VcfAnnotation2ADAMArgs
            47. (object)(class)View
            48. (class)ViewArgs
            49. (class)Wig2BedArgs
            50. (object)(class)WigFix2Bed