defaultCommandGroups
ADAMMain
deferMerging
TransformAlignmentsArgs
TransformFragmentsArgs
TransformGenotypesArgs
TransformVariantsArgs
ViewArgs
disableFastConcat
ADAM2FastaArgs
ADAM2FastqArgs
Reads2CoverageArgs
TransformAlignmentsArgs
TransformFeaturesArgs
TransformFragmentsArgs
TransformGenotypesArgs
TransformVariantsArgs
ViewArgs
disableProcessingStep
TransformAlignmentsArgs
disableProjection
ADAM2FastqArgs
displayRaw
PrintADAM