FlagStat
cli
FlagStatArgs
cli
fastqReadGroup
TransformAlignmentsArgs
featuresPath
TransformFeaturesArgs
filesToPrint
PrintADAMArgs
forceLoadBam
TransformAlignmentsArgs
forceLoadFastq
TransformAlignmentsArgs
forceLoadIFastq
TransformAlignmentsArgs
forceLoadParquet
TransformAlignmentsArgs
forceNonParquet
TransformAlignments
forceShuffle
TransformAlignmentsArgs
TransformGenotypesArgs
TransformVariantsArgs