ADAM2Vcf
cli
ADAM2VcfArgs
cli
ADAMCommand
cli
ADAMCommandCompanion
cli
ADAMMain
cli
ADAMSparkCommand
cli
Args4j
cli
Args4jBase
cli
accessControl
PluginExecutorArgs
adam
bdgenomics
adamFile
ADAM2VcfArgs SummarizeGenotypesArgs
adamInputPath
CalculateDepthArgs
aggregate
Reads2RefArgs
apply
ADAM2Vcf ADAMCommandCompanion Args4j Bam2ADAM BuildInformation CalculateDepth CompareADAM Fasta2ADAM FindReads FlagStat GenotypeConcordance ListDict MpileupCommand PileupAggregator PluginExecutor PrintADAM PrintTags Reads2Ref SummarizeGenotypes Transform Vcf2ADAM VcfAnnotation2ADAM
args
ADAM2Vcf ADAMSparkCommand CalculateDepth CompareADAM Fasta2ADAM FindReads FlagStat GenotypeConcordance ListDict MpileupCommand PileupAggregator PluginExecutor PrintADAM PrintTags Reads2Ref SummarizeGenotypes Transform Vcf2ADAM VcfAnnotation2ADAM