1. org
   1. org.bdgenomics
      1. org.bdgenomics.adam
         1. org.bdgenomics.adam.cli
            1. (object)(class)ADAM2Vcf
            2. (class)ADAM2VcfArgs
            3. (trait)ADAMCommand
            4. (trait)ADAMCommandCompanion
            5. (object)
               ADAMMain
            6. (trait)ADAMSparkCommand
            7. (object)
               Args4j
            8. (class)Args4jBase
            9. (object)(class)Bam2ADAM
            10. (class)Bam2ADAMArgs
            11. (object)(class)BuildInformation
            12. (object)(class)CalculateDepth
            13. (class)CalculateDepthArgs
            14. (object)(class)CompareADAM
            15. (class)CompareADAMArgs
            16. (trait)DictionaryCommand
            17. (object)(class)Fasta2ADAM
            18. (class)Fasta2ADAMArgs
            19. (object)(class)FindReads
            20. (class)FindReadsArgs
            21. (object)(class)FlagStat
            22. (class)FlagStatArgs
            23. (object)(class)GenotypeConcordance
            24. (class)GenotypeConcordanceArgs
            25. (object)(class)ListDict
            26. (class)ListDictArgs
            27. (class)MpileupArgs
            28. (object)(class)MpileupCommand
            29. (trait)ParquetArgs
            30. (object)(class)PileupAggregator
            31. (class)PileupAggregatorArgs
            32. (object)(class)PluginExecutor
            33. (class)PluginExecutorArgs
            34. (object)(class)PrintADAM
            35. (class)PrintADAMArgs
            36. (object)(class)PrintTags
            37. (class)PrintTagsArgs
            38. (object)(class)Reads2Ref
            39. (object)(class)Reads2RefArgs
            40. (trait)SparkArgs
            41. (trait)SparkCommand
            42. (object)(class)SummarizeGenotypes
            43. (class)SummarizeGenotypesArgs
            44. (object)(class)Transform
            45. (class)TransformArgs
            46. (object)(class)Vcf2ADAM
            47. (class)Vcf2ADAMArgs
            48. (object)(class)VcfAnnotation2ADAM
            49. (class)VcfAnnotation2ADAMArgs