CalculateDepth
cli
CalculateDepthArgs
cli
CompareADAM
cli
CompareADAMArgs
cli
cartesian
CalculateDepthArgs
cli
adam
coalesce
SparkArgs
commandDescription
ADAM2Vcf ADAMCommandCompanion Bam2ADAM BuildInformation CalculateDepth CompareADAM Fasta2ADAM FindReads FlagStat GenotypeConcordance ListDict MpileupCommand PileupAggregator PluginExecutor PrintADAM PrintTags Reads2Ref SummarizeGenotypes Transform Vcf2ADAM VcfAnnotation2ADAM
commandName
ADAM2Vcf ADAMCommandCompanion Bam2ADAM BuildInformation CalculateDepth CompareADAM Fasta2ADAM FindReads FlagStat GenotypeConcordance ListDict MpileupCommand PileupAggregator PluginExecutor PrintADAM PrintTags Reads2Ref SummarizeGenotypes Transform Vcf2ADAM VcfAnnotation2ADAM
companion
ADAM2Vcf ADAMCommand Bam2ADAM BuildInformation CalculateDepth CompareADAM Fasta2ADAM FindReads FlagStat GenotypeConcordance ListDict MpileupCommand PileupAggregator PluginExecutor PrintADAM PrintTags Reads2Ref SummarizeGenotypes Transform Vcf2ADAM VcfAnnotation2ADAM
comparisons
CompareADAMArgs
compressionCodec
ParquetArgs
count
PrintTagsArgs
createSparkContext
SparkCommand
currentAnnotations
VcfAnnotation2ADAMArgs