CompareADAM

Value Members

1. final def !=(arg0: AnyRef): Boolean

   Definition Classes

   AnyRef

2. final def !=(arg0: Any): Boolean

   Definition Classes

   Any

3. final def ##(): Int

   Definition Classes

   AnyRef → Any

4. final def ==(arg0: AnyRef): Boolean

   Definition Classes

   AnyRef

5. final def ==(arg0: Any): Boolean

   Definition Classes

   Any

6. val args: CompareADAMArgs

   Attributes

   protected

   Definition Classes

   CompareADAM → ADAMSparkCommand

7. final def asInstanceOf[T0]: T0

   Definition Classes

   Any

8. def clone(): AnyRef

   Attributes

   protected[java.lang]

   Definition Classes

   AnyRef

   Annotations

   @throws( ... )

9. val companion: ADAMCommandCompanion

   Definition Classes

   CompareADAM → ADAMCommand

10. def createSparkContext(args: SparkArgs): SparkContext

    Definition Classes

    SparkCommand

11. final def eq(arg0: AnyRef): Boolean

    Definition Classes

    AnyRef

12. def equals(arg0: Any): Boolean

    Definition Classes

    AnyRef → Any

13. def finalize(): Unit

    Attributes

    protected[java.lang]

    Definition Classes

    AnyRef

    Annotations

    @throws( classOf[java.lang.Throwable] )

14. final def getClass(): Class[_]

    Definition Classes

    AnyRef → Any

15. def hashCode(): Int

    Definition Classes

    AnyRef → Any

16. final def isInstanceOf[T0]: Boolean

    Definition Classes

    Any

17. final def ne(arg0: AnyRef): Boolean

    Definition Classes

    AnyRef

18. final def notify(): Unit

    Definition Classes

    AnyRef

19. final def notifyAll(): Unit

    Definition Classes

    AnyRef

20. def parseEnvVariables(envVariables: ArrayList[String]): Array[(String, String)]

    Commandline format is -spark_env foo=1 -spark_env bar=2

    Commandline format is -spark_env foo=1 -spark_env bar=2

    envVariables

    The variables found on the commandline

    returns

    Definition Classes

    SparkCommand

21. def printSummary(engine: ComparisonTraversalEngine, generators: Seq[BucketComparisons[Any]], aggregateds: Seq[Histogram[Any]], writer: PrintWriter): Unit

    prints out a high-level summary of the compared files, including

    prints out a high-level summary of the compared files, including

    - the number of reads in each file

    - the number of reads which were unique to each file (i.e. not found in the other file, by name)

    - for each generator / aggregation created, prints out the total number of reads that went into the aggregation as well as the total which represent "identity" between the compared files (right now, this second number really only makes sense for the Histogram aggregated value, but that's the only aggregator we're using anyway.)

    engine

    The ComparisonTraversalEngine used for the aggregated values

    writer

    The PrintWriter to print the summary with.

22. def run(sc: SparkContext, job: Job): Unit

    Definition Classes

    CompareADAM → ADAMSparkCommand

23. def run(): Unit

    Definition Classes

    ADAMSparkCommand → Runnable

24. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes

    AnyRef

25. def toString(): String

    Definition Classes

    AnyRef → Any

26. final def wait(): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

27. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )

28. final def wait(arg0: Long): Unit

    Definition Classes

    AnyRef

    Annotations

    @throws( ... )