org.bdgenomics.adam.cli

PileupAggregatorArgs

class PileupAggregatorArgs extends Args4jBase with SparkArgs with ParquetArgs

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  1. PileupAggregatorArgs
  2. ParquetArgs
  3. SparkArgs
  4. Args4jBase
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Instance Constructors

  1. new PileupAggregatorArgs()

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  2. final def !=(arg0: Any): Boolean

    Definition Classes
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  3. final def ##(): Int

    Definition Classes
    AnyRef → Any
  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
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  5. final def ==(arg0: Any): Boolean

    Definition Classes
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  6. final def asInstanceOf[T0]: T0

    Definition Classes
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  7. var blockSize: Int

    Definition Classes
    ParquetArgs
  8. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  9. var coalesce: Int

    Definition Classes
    SparkArgs
  10. var compressionCodec: CompressionCodecName

    Definition Classes
    ParquetArgs
  11. var disableDictionary: Boolean

    Definition Classes
    ParquetArgs
  12. var doPrintUsage: Boolean

    Definition Classes
    Args4jBase
  13. final def eq(arg0: AnyRef): Boolean

    Definition Classes
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  14. def equals(arg0: Any): Boolean

    Definition Classes
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  15. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
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    @throws( classOf[java.lang.Throwable] )
  16. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any
  17. def hashCode(): Int

    Definition Classes
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  18. final def isInstanceOf[T0]: Boolean

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  19. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  20. final def notify(): Unit

    Definition Classes
    AnyRef
  21. final def notifyAll(): Unit

    Definition Classes
    AnyRef
  22. var pageSize: Int

    Definition Classes
    ParquetArgs
  23. var pileupOutput: String

  24. var readInput: String

  25. var repartition: Int

    Definition Classes
    SparkArgs
  26. var spark_add_stats_listener: Boolean

    Definition Classes
    SparkArgs
  27. var spark_env_vars: ArrayList[String]

    Definition Classes
    SparkArgs
  28. var spark_home: String

    Definition Classes
    SparkArgs
  29. var spark_jars: ArrayList[String]

    Definition Classes
    SparkArgs
  30. var spark_kryo_buffer_size: Int

    Definition Classes
    SparkArgs
  31. var spark_master: String

    Definition Classes
    SparkArgs
  32. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef
  33. def toString(): String

    Definition Classes
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  34. final def wait(): Unit

    Definition Classes
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    Annotations
    @throws( ... )
  35. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
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    @throws( ... )
  36. final def wait(arg0: Long): Unit

    Definition Classes
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    @throws( ... )

Inherited from ParquetArgs

Inherited from SparkArgs

Inherited from Args4jBase

Inherited from AnyRef

Inherited from Any

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