org.bdgenomics.adam.cli

PluginExecutor

class PluginExecutor extends ADAMSparkCommand[PluginExecutorArgs]

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  1. PluginExecutor
  2. ADAMSparkCommand
  3. SparkCommand
  4. ADAMCommand
  5. Runnable
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Instance Constructors

  1. new PluginExecutor(args: PluginExecutorArgs)

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  2. final def !=(arg0: Any): Boolean

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  3. final def ##(): Int

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  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
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  5. final def ==(arg0: Any): Boolean

    Definition Classes
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  6. val args: PluginExecutorArgs

    Attributes
    protected
    Definition Classes
    PluginExecutorADAMSparkCommand
  7. final def asInstanceOf[T0]: T0

    Definition Classes
    Any
  8. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
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    Annotations
    @throws( ... )
  9. val companion: ADAMCommandCompanion

    Definition Classes
    PluginExecutorADAMCommand
  10. def createSparkContext(args: SparkArgs): SparkContext

    Definition Classes
    SparkCommand
  11. final def eq(arg0: AnyRef): Boolean

    Definition Classes
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  12. def equals(arg0: Any): Boolean

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  13. def finalize(): Unit

    Attributes
    protected[java.lang]
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    @throws( classOf[java.lang.Throwable] )
  14. final def getClass(): Class[_]

    Definition Classes
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  15. def hashCode(): Int

    Definition Classes
    AnyRef → Any
  16. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any
  17. def load[Input](sc: SparkContext, locations: String, projection: Option[Schema])(implicit arg0: (Input) ⇒ SpecificRecord, arg1: Manifest[Input]): RDD[Input]

  18. def loadAccessControl[Input](accessControl: String)(implicit arg0: (Input) ⇒ SpecificRecord, arg1: Manifest[Input]): AccessControl[Input]

  19. def loadPlugin[Input, Output](pluginName: String)(implicit arg0: (Input) ⇒ SpecificRecord, arg1: Manifest[Input]): ADAMPlugin[Input, Output]

  20. final def ne(arg0: AnyRef): Boolean

    Definition Classes
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  21. final def notify(): Unit

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  22. final def notifyAll(): Unit

    Definition Classes
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  23. def output[Output](sc: SparkContext, output: RDD[Output]): Unit

  24. def parseEnvVariables(envVariables: ArrayList[String]): Array[(String, String)]

    Commandline format is -spark_env foo=1 -spark_env bar=2

    Commandline format is -spark_env foo=1 -spark_env bar=2

    envVariables

    The variables found on the commandline

    returns

    Definition Classes
    SparkCommand
  25. def run(sc: SparkContext, job: Job): Unit

    Definition Classes
    PluginExecutorADAMSparkCommand
  26. def run(): Unit

    Definition Classes
    ADAMSparkCommand → Runnable
  27. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
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  28. def toString(): String

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  29. final def wait(): Unit

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    @throws( ... )
  30. final def wait(arg0: Long, arg1: Int): Unit

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    @throws( ... )
  31. final def wait(arg0: Long): Unit

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    @throws( ... )

Inherited from SparkCommand

Inherited from ADAMCommand

Inherited from Runnable

Inherited from AnyRef

Inherited from Any

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