1. org
   1. org.bdgenomics
      1. org.bdgenomics.adam
         1. org.bdgenomics.adam.cli
            1. (object)(class)ADAM2Vcf
            2. (class)ADAM2VcfArgs
            3. (trait)ADAMCommand
            4. (trait)ADAMCommandCompanion
            5. (object)
               ADAMMain
            6. (trait)ADAMSparkCommand
            7. (object)(class)AlleleCount
            8. (class)AlleleCountArgs
            9. (object)
               AlleleCountHelper
            10. (object)
                Args4j
            11. (class)Args4jBase
            12. (object)(class)Bam2ADAM
            13. (class)Bam2ADAMArgs
            14. (object)(class)BuildInformation
            15. (object)(class)CalculateDepth
            16. (class)CalculateDepthArgs
            17. (object)(class)CompareADAM
            18. (class)CompareADAMArgs
            19. (object)(class)CountKmers
            20. (class)CountKmersArgs
            21. (trait)DictionaryCommand
            22. (object)(class)Fasta2ADAM
            23. (class)Fasta2ADAMArgs
            24. (object)(class)Features2ADAM
            25. (class)Features2ADAMArgs
            26. (object)(class)FindReads
            27. (class)FindReadsArgs
            28. (object)(class)FlagStat
            29. (class)FlagStatArgs
            30. (object)(class)GenotypeConcordance
            31. (class)GenotypeConcordanceArgs
            32. (object)(class)IndexFlatGenotype
            33. (class)IndexFlatGenotypeArgs
            34. (object)(class)ListDict
            35. (class)ListDictArgs
            36. (class)MpileupArgs
            37. (object)(class)MpileupCommand
            38. (trait)ParquetArgs
            39. (object)(class)PileupAggregator
            40. (class)PileupAggregatorArgs
            41. (object)(class)PluginExecutor
            42. (class)PluginExecutorArgs
            43. (object)(class)PrintADAM
            44. (class)PrintADAMArgs
            45. (object)(class)PrintParquet
            46. (class)PrintParquetArgs
            47. (object)(class)PrintTags
            48. (class)PrintTagsArgs
            49. (object)(class)Reads2Ref
            50. (object)(class)Reads2RefArgs
            51. (trait)SparkArgs
            52. (trait)SparkCommand
            53. (object)(class)SummarizeGenotypes
            54. (class)SummarizeGenotypesArgs
            55. (object)(class)Transform
            56. (class)TransformArgs
            57. (object)(class)Vcf2ADAM
            58. (class)Vcf2ADAMArgs
            59. (object)(class)Vcf2FlatGenotype
            60. (class)Vcf2FlatGenotypeArgs
            61. (object)(class)VcfAnnotation2ADAM
            62. (class)VcfAnnotation2ADAMArgs