org.bdgenomics.adam.cli

Reads2RefArgs

class Reads2RefArgs extends Args4jBase with ParquetArgs with SparkArgs

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  1. Reads2RefArgs
  2. SparkArgs
  3. ParquetArgs
  4. Args4jBase
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  6. Any
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Instance Constructors

  1. new Reads2RefArgs()

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any
  3. final def ##(): Int

    Definition Classes
    AnyRef → Any
  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any
  6. var aggregate: Boolean

  7. final def asInstanceOf[T0]: T0

    Definition Classes
    Any
  8. var blockSize: Int

    Definition Classes
    ParquetArgs
  9. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  10. var coalesce: Int

    Definition Classes
    SparkArgs
  11. var compressionCodec: CompressionCodecName

    Definition Classes
    ParquetArgs
  12. var disableDictionary: Boolean

    Definition Classes
    ParquetArgs
  13. var doPrintUsage: Boolean

    Definition Classes
    Args4jBase
  14. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  15. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any
  16. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  17. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any
  18. def hashCode(): Int

    Definition Classes
    AnyRef → Any
  19. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any
  20. var logLevel: String

    Definition Classes
    ParquetArgs
  21. var minMapq: Long

  22. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  23. var nonPrimary: Boolean

  24. final def notify(): Unit

    Definition Classes
    AnyRef
  25. final def notifyAll(): Unit

    Definition Classes
    AnyRef
  26. var pageSize: Int

    Definition Classes
    ParquetArgs
  27. var pileupOutput: String

  28. var printMetrics: Boolean

    Definition Classes
    Args4jBase
  29. var readInput: String

  30. var repartition: Int

    Definition Classes
    SparkArgs
  31. var spark_add_stats_listener: Boolean

    Definition Classes
    SparkArgs
  32. var spark_env_vars: ArrayList[String]

    Definition Classes
    SparkArgs
  33. var spark_home: String

    Definition Classes
    SparkArgs
  34. var spark_jars: ArrayList[String]

    Definition Classes
    SparkArgs
  35. var spark_kryo_buffer_size: Int

    Definition Classes
    SparkArgs
  36. var spark_master: String

    Definition Classes
    SparkArgs
  37. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef
  38. def toString(): String

    Definition Classes
    AnyRef → Any
  39. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  40. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  41. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from SparkArgs

Inherited from ParquetArgs

Inherited from Args4jBase

Inherited from AnyRef

Inherited from Any

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