ParquetArgs
cli
PileupAggregator
cli
PileupAggregatorArgs
cli
PluginExecutor
cli
PluginExecutorArgs
cli
PrintADAM
cli
PrintADAMArgs
cli
PrintParquet
cli
PrintParquetArgs
cli
PrintTags
cli
PrintTagsArgs
cli
pageSize
ParquetArgs
parquetFile
PrintParquetArgs
parseEnvVariables
SparkCommand
parseFilter
FindReads
parseFilters
FindReads
parseGenerators
CompareADAM
pileupOutput
PileupAggregatorArgs
Reads2RefArgs
plugin
PluginExecutorArgs
pluginArgs
PluginExecutorArgs
prettyRaw
PrintADAMArgs
printHistogram
CountKmersArgs
printJsonFreq
VizReads
printMetrics
ADAMSparkCommand
Args4jBase
printSummary
CompareADAM
printTrackJson
VizReads