Reads2Ref
cli
Reads2RefArgs
cli
readInput
MpileupArgs
PileupAggregatorArgs
Reads2RefArgs
readName
TrackJson
reads
Fasta2ADAMArgs
VizReads
recalibrateBaseQualities
TransformArgs
recurse1
CompareADAMArgs
FindReadsArgs
recurse2
CompareADAMArgs
FindReadsArgs
refName
VizReads
VizReadsArgs
regInfo
VizServlet
repartition
SparkArgs
run
ADAM2Vcf
ADAMSparkCommand
AlleleCount
Bam2ADAM
BuildInformation
CalculateDepth
CompareADAM
CountKmers
Fasta2ADAM
Features2ADAM
FindReads
FlagStat
GenotypeConcordance
IndexFlatGenotype
ListDict
MpileupCommand
PileupAggregator
PluginExecutor
PrintADAM
PrintParquet
PrintTags
Reads2Ref
SummarizeGenotypes
Transform
Vcf2ADAM
Vcf2FlatGenotype
VcfAnnotation2ADAM
VizReads