org.bdgenomics.adam.cli

CalculateDepthArgs

class CalculateDepthArgs extends Args4jBase with SparkArgs with ParquetArgs

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  1. CalculateDepthArgs
  2. ParquetArgs
  3. SparkArgs
  4. Args4jBase
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Instance Constructors

  1. new CalculateDepthArgs()

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  2. final def !=(arg0: Any): Boolean

    Definition Classes
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  3. final def ##(): Int

    Definition Classes
    AnyRef → Any
  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any
  6. val adamInputPath: String

  7. final def asInstanceOf[T0]: T0

    Definition Classes
    Any
  8. var blockSize: Int

    Definition Classes
    ParquetArgs
  9. val cartesian: Boolean

  10. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
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    Annotations
    @throws( ... )
  11. var coalesce: Int

    Definition Classes
    SparkArgs
  12. var compressionCodec: CompressionCodecName

    Definition Classes
    ParquetArgs
  13. var disableDictionary: Boolean

    Definition Classes
    ParquetArgs
  14. var doPrintUsage: Boolean

    Definition Classes
    Args4jBase
  15. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  16. def equals(arg0: Any): Boolean

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    AnyRef → Any
  17. def finalize(): Unit

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    protected[java.lang]
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    @throws( classOf[java.lang.Throwable] )
  18. final def getClass(): Class[_]

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  19. def hashCode(): Int

    Definition Classes
    AnyRef → Any
  20. final def isInstanceOf[T0]: Boolean

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    Any
  21. var logLevel: String

    Definition Classes
    ParquetArgs
  22. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  23. final def notify(): Unit

    Definition Classes
    AnyRef
  24. final def notifyAll(): Unit

    Definition Classes
    AnyRef
  25. var pageSize: Int

    Definition Classes
    ParquetArgs
  26. var printMetrics: Boolean

    Definition Classes
    Args4jBase
  27. var repartition: Int

    Definition Classes
    SparkArgs
  28. var spark_add_stats_listener: Boolean

    Definition Classes
    SparkArgs
  29. var spark_env_vars: ArrayList[String]

    Definition Classes
    SparkArgs
  30. var spark_home: String

    Definition Classes
    SparkArgs
  31. var spark_jars: ArrayList[String]

    Definition Classes
    SparkArgs
  32. var spark_kryo_buffer_size: Int

    Definition Classes
    SparkArgs
  33. var spark_master: String

    Definition Classes
    SparkArgs
  34. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef
  35. def toString(): String

    Definition Classes
    AnyRef → Any
  36. val vcfInputPath: String

  37. final def wait(): Unit

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    @throws( ... )
  38. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
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    @throws( ... )
  39. final def wait(arg0: Long): Unit

    Definition Classes
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    @throws( ... )

Inherited from ParquetArgs

Inherited from SparkArgs

Inherited from Args4jBase

Inherited from AnyRef

Inherited from Any

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