org.bdgenomics.adam.cli

Reads2RefArgs

class Reads2RefArgs extends Args4jBase with ParquetArgs

Linear Supertypes
ParquetArgs, Args4jBase, AnyRef, Any
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Inherited
  1. Reads2RefArgs
  2. ParquetArgs
  3. Args4jBase
  4. AnyRef
  5. Any
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Visibility
  1. Public
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Instance Constructors

  1. new Reads2RefArgs()

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any
  3. final def ##(): Int

    Definition Classes
    AnyRef → Any
  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any
  6. var aggregate: Boolean

  7. final def asInstanceOf[T0]: T0

    Definition Classes
    Any
  8. var blockSize: Int

    Definition Classes
    ParquetArgs
  9. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  10. var compressionCodec: CompressionCodecName

    Definition Classes
    ParquetArgs
  11. var disableDictionary: Boolean

    Definition Classes
    ParquetArgs
  12. var doPrintUsage: Boolean

    Definition Classes
    Args4jBase
  13. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  14. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any
  15. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )
  16. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any
  17. def hashCode(): Int

    Definition Classes
    AnyRef → Any
  18. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any
  19. var logLevel: String

    Definition Classes
    ParquetArgs
  20. var minMapq: Long

  21. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef
  22. var nonPrimary: Boolean

  23. final def notify(): Unit

    Definition Classes
    AnyRef
  24. final def notifyAll(): Unit

    Definition Classes
    AnyRef
  25. var pageSize: Int

    Definition Classes
    ParquetArgs
  26. var pileupOutput: String

  27. var printMetrics: Boolean

    Definition Classes
    Args4jBase
  28. var readInput: String

  29. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef
  30. def toString(): String

    Definition Classes
    AnyRef → Any
  31. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  32. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )
  33. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from ParquetArgs

Inherited from Args4jBase

Inherited from AnyRef

Inherited from Any

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