Instance Constructors
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new
TransformArgs()
Value Members
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final
def
!=(arg0: AnyRef): Boolean
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final
def
!=(arg0: Any): Boolean
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final
def
##(): Int
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final
def
==(arg0: AnyRef): Boolean
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final
def
==(arg0: Any): Boolean
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final
def
asInstanceOf[T0]: T0
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var
blockSize: Int
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def
clone(): AnyRef
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var
coalesce: Int
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var
compressionCodec: CompressionCodecName
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var
disableDictionary: Boolean
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var
doPrintUsage: Boolean
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final
def
eq(arg0: AnyRef): Boolean
-
def
equals(arg0: Any): Boolean
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def
finalize(): Unit
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final
def
getClass(): Class[_]
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def
hashCode(): Int
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var
inputPath: String
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final
def
isInstanceOf[T0]: Boolean
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var
knownSnpsFile: String
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var
locallyRealign: Boolean
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var
logLevel: String
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var
markDuplicates: Boolean
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final
def
ne(arg0: AnyRef): Boolean
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final
def
notify(): Unit
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final
def
notifyAll(): Unit
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var
outputPath: String
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var
pageSize: Int
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var
printMetrics: Boolean
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var
qualityBasedTrim: Boolean
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var
qualityThreshold: Int
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var
recalibrateBaseQualities: Boolean
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var
repartition: Int
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var
sortReads: Boolean
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final
def
synchronized[T0](arg0: ⇒ T0): T0
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def
toString(): String
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var
trimBeforeBQSR: Boolean
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var
trimEnd: Int
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var
trimReadGroup: String
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var
trimReads: Boolean
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var
trimStart: Int
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final
def
wait(): Unit
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final
def
wait(arg0: Long, arg1: Int): Unit
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final
def
wait(arg0: Long): Unit
Inherited from AnyRef
Inherited from Any
