ReadFilter
View
Reads2Ref
cli
Reads2RefArgs
cli
readInput
MpileupArgs
Reads2RefArgs
readName
TrackJson
reads
Fasta2ADAMArgs
VizReads
recalibrateBaseQualities
TransformArgs
recurse1
CompareADAMArgs
FindReadsArgs
recurse2
CompareADAMArgs
FindReadsArgs
refName
VizReads
VizReadsArgs
regInfo
VizServlet
repartition
Adam2FastqArgs
CountKmersArgs
TransformArgs
run
ADAM2Vcf
ADAMSparkCommand
Adam2Fastq
AlleleCount
Bam2ADAM
BuildInformation
CalculateDepth
CompareADAM
CountKmers
Fasta2ADAM
Features2ADAM
FindReads
FlagStat
GenotypeConcordance
ListDict
MpileupCommand
PluginExecutor
PrintADAM
PrintGenes
PrintTags
Reads2Ref
SummarizeGenotypes
Transform
Vcf2ADAM
VcfAnnotation2ADAM
View
VizReads
WigFix2Bed