org.bdgenomics.adam.cli

ADAMSparkCommand

trait ADAMSparkCommand[A <: Args4jBase with SparkArgs] extends ADAMCommand with SparkCommand

Linear Supertypes
SparkCommand, ADAMCommand, Runnable, AnyRef, Any
Known Subclasses
ADAM2Vcf, CalculateDepth, CompareADAM, Fasta2ADAM, FindReads, FlagStat, GenotypeConcordance, ListDict, MpileupCommand, PileupAggregator, PluginExecutor, PrintADAM, PrintTags, Reads2Ref, SummarizeGenotypes, Transform, Vcf2ADAM, VcfAnnotation2ADAM
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Inherited
  1. ADAMSparkCommand
  2. SparkCommand
  3. ADAMCommand
  4. Runnable
  5. AnyRef
  6. Any
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Visibility
  1. Public
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Abstract Value Members

  1. abstract val args: A

    Attributes
    protected

  2. abstract val companion: ADAMCommandCompanion

    Definition Classes
    ADAMCommand

  3. abstract def run(sc: SparkContext, job: Job): Unit

Concrete Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  7. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  8. def createSparkContext(args: SparkArgs): SparkContext

    Definition Classes
    SparkCommand

  9. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  10. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  11. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  12. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  13. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  14. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  15. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  16. final def notify(): Unit

    Definition Classes
    AnyRef

  17. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  18. def run(): Unit

    Definition Classes
    ADAMSparkCommand → Runnable

  19. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  20. def toString(): String

    Definition Classes
    AnyRef → Any

  21. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  22. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  23. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from SparkCommand

Inherited from ADAMCommand

Inherited from Runnable

Inherited from AnyRef

Inherited from Any

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