1. org
   1. org.bdgenomics
      1. org.bdgenomics.adam
         1. org.bdgenomics.adam.cli
            1. (object)(class)ADAM2Vcf
            2. (class)ADAM2VcfArgs
            3. (trait)ADAMCommand
            4. (trait)ADAMCommandCompanion
            5. (object)
               ADAMMain
            6. (trait)ADAMSparkCommand
            7. (object)
               Args4j
            8. (class)Args4jBase
            9. (object)(class)Bam2ADAM
            10. (class)Bam2ADAMArgs
            11. (object)(class)BuildInformation
            12. (object)(class)CalculateDepth
            13. (class)CalculateDepthArgs
            14. (object)(class)CompareADAM
            15. (class)CompareADAMArgs
            16. (object)(class)Fasta2ADAM
            17. (class)Fasta2ADAMArgs
            18. (object)(class)FindReads
            19. (class)FindReadsArgs
            20. (object)(class)FlagStat
            21. (class)FlagStatArgs
            22. (object)(class)GenotypeConcordance
            23. (class)GenotypeConcordanceArgs
            24. (object)(class)ListDict
            25. (class)ListDictArgs
            26. (class)MpileupArgs
            27. (object)(class)MpileupCommand
            28. (trait)ParquetArgs
            29. (object)(class)PileupAggregator
            30. (class)PileupAggregatorArgs
            31. (object)(class)PluginExecutor
            32. (class)PluginExecutorArgs
            33. (object)(class)PrintADAM
            34. (class)PrintADAMArgs
            35. (object)(class)PrintTags
            36. (class)PrintTagsArgs
            37. (object)(class)Reads2Ref
            38. (object)(class)Reads2RefArgs
            39. (trait)SparkArgs
            40. (trait)SparkCommand
            41. (object)(class)SummarizeGenotypes
            42. (class)SummarizeGenotypesArgs
            43. (object)(class)Transform
            44. (class)TransformArgs
            45. (object)(class)Vcf2ADAM
            46. (class)Vcf2ADAMArgs
            47. (object)(class)VcfAnnotation2ADAM
            48. (class)VcfAnnotation2ADAMArgs