org.bdgenomics.adam.cli

PileupAggregator

class PileupAggregator extends ADAMSparkCommand[PileupAggregatorArgs]

Linear Supertypes
ADAMSparkCommand[PileupAggregatorArgs], SparkCommand, ADAMCommand, Runnable, AnyRef, Any
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Inherited
  1. PileupAggregator
  2. ADAMSparkCommand
  3. SparkCommand
  4. ADAMCommand
  5. Runnable
  6. AnyRef
  7. Any
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Visibility
  1. Public
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Instance Constructors

  1. new PileupAggregator(args: PileupAggregatorArgs)

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. val args: PileupAggregatorArgs

    Attributes
    protected
    Definition Classes
    PileupAggregator → ADAMSparkCommand

  7. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  8. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  9. val companion: PileupAggregator.type

    Definition Classes
    PileupAggregator → ADAMCommand

  10. def createSparkContext(args: SparkArgs): SparkContext

    Definition Classes
    SparkCommand

  11. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  12. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  13. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  14. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  15. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  16. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  17. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  18. final def notify(): Unit

    Definition Classes
    AnyRef

  19. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  20. def run(sc: SparkContext, job: Job): Unit

    Definition Classes
    PileupAggregator → ADAMSparkCommand

  21. def run(): Unit

    Definition Classes
    ADAMSparkCommand → Runnable

  22. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  23. def toString(): String

    Definition Classes
    AnyRef → Any

  24. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  25. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  26. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from ADAMSparkCommand[PileupAggregatorArgs]

Inherited from SparkCommand

Inherited from ADAMCommand

Inherited from Runnable

Inherited from AnyRef

Inherited from Any

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