org.bdgenomics.adam.cli

Reads2Ref

class Reads2Ref extends ADAMSparkCommand[Reads2RefArgs]

Linear Supertypes
ADAMSparkCommand[Reads2RefArgs], SparkCommand, ADAMCommand, Runnable, AnyRef, Any
Ordering
  1. Alphabetic
  2. By inheritance
Inherited
  1. Reads2Ref
  2. ADAMSparkCommand
  3. SparkCommand
  4. ADAMCommand
  5. Runnable
  6. AnyRef
  7. Any
  1. Hide All
  2. Show all
Learn more about member selection
Visibility
  1. Public
  2. All

Instance Constructors

  1. new Reads2Ref(args: Reads2RefArgs)

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. val args: Reads2RefArgs

    Attributes
    protected
    Definition Classes
    Reads2Ref → ADAMSparkCommand

  7. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  8. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  9. val companion: Reads2Ref.type

    Definition Classes
    Reads2Ref → ADAMCommand

  10. def createSparkContext(args: SparkArgs): SparkContext

    Definition Classes
    SparkCommand

  11. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  12. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  13. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  14. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  15. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  16. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  17. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  18. final def notify(): Unit

    Definition Classes
    AnyRef

  19. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  20. def run(sc: SparkContext, job: Job): Unit

    Definition Classes
    Reads2Ref → ADAMSparkCommand

  21. def run(): Unit

    Definition Classes
    ADAMSparkCommand → Runnable

  22. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  23. def toString(): String

    Definition Classes
    AnyRef → Any

  24. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  25. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  26. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from ADAMSparkCommand[Reads2RefArgs]

Inherited from SparkCommand

Inherited from ADAMCommand

Inherited from Runnable

Inherited from AnyRef

Inherited from Any

Ungrouped