1. org
   1. org.bdgenomics
      1. org.bdgenomics.adam
         1. org.bdgenomics.adam.cli
            1. (object)(class)Adam2Fastq
            2. (class)Adam2FastqArgs
            3. (object)(class)ADAM2Vcf
            4. (class)ADAM2VcfArgs
            5. (object)
               ADAMMain
            6. (object)(class)AlleleCount
            7. (class)AlleleCountArgs
            8. (object)
               AlleleCountHelper
            9. (object)(class)BuildInformation
            10. (object)(class)CalculateDepth
            11. (class)CalculateDepthArgs
            12. (object)(class)CountContigKmers
            13. (class)CountContigKmersArgs
            14. (object)(class)CountReadKmers
            15. (class)CountReadKmersArgs
            16. (trait)DictionaryCommand
            17. (object)(class)Fasta2ADAM
            18. (class)Fasta2ADAMArgs
            19. (object)(class)Features2ADAM
            20. (class)Features2ADAMArgs
            21. (object)(class)FlagStat
            22. (class)FlagStatArgs
            23. (object)(class)Flatten
            24. (class)FlattenArgs
            25. (object)(class)ListDict
            26. (class)ListDictArgs
            27. (object)(class)PluginExecutor
            28. (class)PluginExecutorArgs
            29. (object)(class)PrintADAM
            30. (class)PrintADAMArgs
            31. (object)(class)PrintGenes
            32. (class)PrintGenesArgs
            33. (object)(class)PrintTags
            34. (class)PrintTagsArgs
            35. (object)(class)Transform
            36. (class)TransformArgs
            37. (object)(class)Vcf2ADAM
            38. (class)Vcf2ADAMArgs
            39. (object)(class)VcfAnnotation2ADAM
            40. (class)VcfAnnotation2ADAMArgs
            41. (object)(class)View
            42. (class)ViewArgs
            43. (class)Wig2BedArgs
            44. (object)(class)WigFix2Bed