1. org
   1. org.bdgenomics
      1. org.bdgenomics.adam
         1. org.bdgenomics.adam.cli
            1. (class)About
            2. (object)(class)ADAM2Fasta
            3. (class)ADAM2FastaArgs
            4. (object)(class)ADAM2Fastq
            5. (class)ADAM2FastqArgs
            6. (object)(class)ADAMMain
            7. (class)ADAMModule
            8. (case class)CommandGroup
            9. (object)(class)CountContigKmers
            10. (class)CountContigKmersArgs
            11. (object)(class)CountReadKmers
            12. (class)CountReadKmersArgs
            13. (object)(class)Fasta2ADAM
            14. (class)Fasta2ADAMArgs
            15. (object)(class)FlagStat
            16. (class)FlagStatArgs
            17. (object)(class)MergeShards
            18. (class)MergeShardsArgs
            19. (object)(class)PrintADAM
            20. (class)PrintADAMArgs
            21. (object)(class)Reads2Coverage
            22. (class)Reads2CoverageArgs
            23. (object)(class)TransformAlignments
            24. (class)TransformAlignmentsArgs
            25. (object)(class)TransformFeatures
            26. (class)TransformFeaturesArgs
            27. (object)(class)TransformFragments
            28. (class)TransformFragmentsArgs
            29. (object)(class)TransformGenotypes
            30. (class)TransformGenotypesArgs
            31. (object)(class)TransformVariants
            32. (class)TransformVariantsArgs
            33. (object)(class)View
            34. (class)ViewArgs