G
Base
GeneratedType
ComparisonTraversalEngine
GeneratorFilter
filters
GenericRange
realignmenttarget
GenomicRegionPartitioner
rdd
GenotypeAlleleCounts
GenotypesSummaryCounts
GenotypeRecordPASSPredicate
predicates
GenotypesSummary
rdd
GenotypesSummaryCounts
rdd
GenotypesSummaryFormatting
rdd
geneSymbol
ADAMDatabaseVariantAnnotationField
generate
ComparisonTraversalEngine
generateAlternateConsensus
Consensus
genotype
RichADAMGenotype
genotypeLikelihoods
ADAMGenotypeField
genotypeQuality
ADAMGenotypeField
genotypeToRichGenotype
RichADAMGenotype
genotypes
ADAMVariantContext
genotypesCount
GenotypesSummaryCounts
genotypesCounts
GenotypesSummaryCounts
gerpNr
ADAMDatabaseVariantAnnotationField
gerpRs
ADAMDatabaseVariantAnnotationField
get
ConcordanceTable
getHeader
ADAMVCFOutputFormat
getIndelRange
IndelRange
getIndelSet
IndelRealignmentTarget
getLength
RichCigar
getPartition
GenomicRegionPartitioner
getReadRange
GenericRange
IndelRealignmentTarget
getReference
MdTag
getReferenceContext
RichADAMRecord
getReferenceName
ReferenceMapping
ADAMRecordReferenceMapping
ReferenceRegionReferenceMapping
getReferenceNames
SequenceDictionary
getReferenceRegion
ReferenceMapping
ADAMRecordReferenceMapping
ReferenceRegionReferenceMapping
getSNPSet
IndelRealignmentTarget
getSNPSite
SNPRange
getSequenceRecordsFromElement
ADAMNucleotideContigFragmentRDDFunctions
ADAMRecordRDDFunctions
ADAMSequenceDictionaryRDDAggregator
ADAMSpecificRecordSequenceDictionaryRDDAggregator
ADAMVariantContextRDDFunctions
getSortKey
IndelRealignmentTarget
getType
RichADAMGenotype
globalTable
RecalibrationTable