org.bdgenomics.adam.algorithms.realignmenttarget

RealignmentTargetFinder

object RealignmentTargetFinder extends Serializable

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  6. def apply(rdd: RDD[ADAMRecord]): TreeSet[IndelRealignmentTarget]

    Generates realignment targets from a set of reads.

    Generates realignment targets from a set of reads.

    rdd

    RDD of reads to use in generating realignment targets.

    returns

    Sorted set of realignment targets.

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