realignmenttarget

Type Members

1. abstract class GenericRange extends AnyRef

2. case class IndelRange(indelRange: NumericRange[Long], readRange: NumericRange[Long]) extends GenericRange with Ordered[IndelRange] with Product with Serializable

3. class IndelRangeSerializer extends Serializer[IndelRange]

4. class IndelRealignmentTarget extends Logging

5. class RangeAccumulator[T <: GenericRange] extends AnyRef

6. class RealignmentTargetFinder extends Serializable with Logging

7. case class SNPRange(snpSite: Long, readRange: NumericRange[Long]) extends GenericRange with Ordered[SNPRange] with Product with Serializable

8. class SNPRangeSerializer extends Serializer[SNPRange]

9. class TreeSetSerializer extends Serializer[TreeSet[IndelRealignmentTarget]]