org.bdgenomics.adam.models

SequenceRecord

class SequenceRecord extends Serializable

Utility class within the SequenceDictionary; represents unique reference name-to-id correspondence

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Serializable, Serializable, AnyRef, Any
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  1. SequenceRecord
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Instance Constructors

  1. new SequenceRecord(name: CharSequence, length: Long, url: CharSequence, md5: CharSequence)

    name
    length
    url
    md5

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  7. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  8. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  9. def equals(x: Any): Boolean

    Definition Classes
    SequenceRecord → AnyRef → Any

  10. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  11. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  12. def hashCode(): Int

    Definition Classes
    SequenceRecord → AnyRef → Any

  13. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  14. val length: Long

  15. val md5: CharSequence

  16. val name: CharSequence

  17. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  18. final def notify(): Unit

    Definition Classes
    AnyRef

  19. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  20. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  21. def toSAMSequenceRecord(): SAMSequenceRecord

    Converts this sequence record into a SAM sequence record.

    Converts this sequence record into a SAM sequence record.

    returns

    A SAM formatted sequence record.

  22. def toString(): String

    Definition Classes
    SequenceRecord → AnyRef → Any

  23. val url: CharSequence

  24. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  25. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  26. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

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