ADAMPileupRDDFunctions

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6. def adamAggregatePileups(coverage: Int = 30): RDD[ADAMPileup]

   Aggregates pileup bases together.

   Aggregates pileup bases together.

   coverage

   Coverage value is used to increase number of reducer operators.

   returns

   RDD with aggregated bases.

   See also

   ADAMRodRDDFunctions#adamAggregateRods

7. def adamPileupsToRods(coverage: Int = 30): RDD[ADAMRod]

   Converts ungrouped pileup bases into reference grouped bases.

   Converts ungrouped pileup bases into reference grouped bases.

   coverage

   Coverage value is used to increase number of reducer operators.

   returns

   RDD with rods grouped by reference position.

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