org.bdgenomics.adam.rdd.recalibration

CovariateKey

class CovariateKey extends Serializable

Represents a tuple containing a value for each covariate.

The values for mandatory covariates are stored in member fields and optional covariate valuess are in extras.

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  1. CovariateKey
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Instance Constructors

  1. new CovariateKey(readGroup: String, quality: QualityScore, extras: Seq[Option[Value]])

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

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  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

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  5. final def ==(arg0: Any): Boolean

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  6. final def asInstanceOf[T0]: T0

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  7. def clone(): AnyRef

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    protected[java.lang]
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    @throws( ... )

  8. def containsNone: Boolean

  9. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  10. def equals(other: Any): Boolean

    Definition Classes
    CovariateKey → AnyRef → Any

  11. val extras: Seq[Option[Value]]

  12. def finalize(): Unit

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    protected[java.lang]
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    @throws( classOf[java.lang.Throwable] )

  13. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  14. def hashCode(): Int

    Definition Classes
    CovariateKey → AnyRef → Any

  15. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  16. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  17. final def notify(): Unit

    Definition Classes
    AnyRef

  18. final def notifyAll(): Unit

    Definition Classes
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  19. def parts: Seq[Any]

  20. val quality: QualityScore

  21. val readGroup: String

  22. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  23. def toString(): String

    Definition Classes
    CovariateKey → AnyRef → Any

  24. final def wait(): Unit

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    @throws( ... )

  25. final def wait(arg0: Long, arg1: Int): Unit

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    @throws( ... )

  26. final def wait(arg0: Long): Unit

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