ADAMVariationContext

Value Members

1. final def !=(arg0: AnyRef): Boolean

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2. final def !=(arg0: Any): Boolean

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3. final def ##(): Int

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4. final def ==(arg0: AnyRef): Boolean

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5. final def ==(arg0: Any): Boolean

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6. def adamVCFAnnotationLoad(filePath: String): RDD[ADAMDatabaseVariantAnnotation]

7. def adamVCFLoad(filePath: String, extractExternalAnnotations: Boolean = false): RDD[ADAMVariantContext]

   This method will create a new RDD of VariantContext objects

   This method will create a new RDD of VariantContext objects

   returns

   RDD of variants

8. def adamVCFSave(filePath: String, variants: RDD[ADAMVariantContext], dict: Option[SequenceDictionary] = None): Unit

9. final def asInstanceOf[T0]: T0

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10. def clone(): AnyRef

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    protected[java.lang]

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11. final def eq(arg0: AnyRef): Boolean

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12. def equals(arg0: Any): Boolean

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13. def finalize(): Unit

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    protected[java.lang]

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14. final def getClass(): Class[_]

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15. def hashCode(): Int

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16. final def isInstanceOf[T0]: Boolean

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17. def isTraceEnabled(): Boolean

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18. def log: Logger

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19. def logDebug(msg: ⇒ String, throwable: Throwable): Unit

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20. def logDebug(msg: ⇒ String): Unit

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21. def logError(msg: ⇒ String, throwable: Throwable): Unit

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22. def logError(msg: ⇒ String): Unit

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23. def logInfo(msg: ⇒ String, throwable: Throwable): Unit

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24. def logInfo(msg: ⇒ String): Unit

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25. def logTrace(msg: ⇒ String, throwable: Throwable): Unit

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26. def logTrace(msg: ⇒ String): Unit

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27. def logWarning(msg: ⇒ String, throwable: Throwable): Unit

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28. def logWarning(msg: ⇒ String): Unit

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29. final def ne(arg0: AnyRef): Boolean

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30. final def notify(): Unit

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31. final def notifyAll(): Unit

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32. final def synchronized[T0](arg0: ⇒ T0): T0

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33. def toString(): String

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34. final def wait(): Unit

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35. final def wait(arg0: Long, arg1: Int): Unit

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36. final def wait(arg0: Long): Unit

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