EmptyAccessControl
plugins
EqualityFilter
BucketComparisons
empiricalErrorProbability
Observation
empiricalQuality
Observation
empty
DuplicateMetrics
Aggregate
Observation
emptyFailedQuality
FlagStatMetrics
emptyPassedQuality
FlagStatMetrics
emptyRange
IndelRange
SNPRange
emptyTarget
IndelRealignmentTarget
enableVisitLogging
BaseQualityRecalibration
encoder
AvroSerializer
encoding
IntervalListReader
end
ReferenceRegion
RichADAMRecord
MdTag
endpoints
NonoverlappingRegions
ensemblGeneId
ADAMDatabaseVariantAnnotationField
ensemblTranscriptIds
ADAMDatabaseVariantAnnotationField
ensureAligned
DecadentRead
entries
ObservationTable
equals
TargetOrdering
SequenceDictionary
SequenceRecord
GenomicRegionPartitioner
CovariateKey
CovariateSpace
CycleCovariate
DinucCovariate
Observation
RichADAMVariant
LocalFileLocator
MdTag
QualityScore
errorProbability
QualityScore
errorProbabilityToPhred
PhredUtils
eventLength
DeletionEvent
MatchEvent
MismatchEvent
eventOffset
DeletionEvent
MatchEvent
MismatchEvent
expectedMismatches
Aggregate
extraTables
RecalibrationTable
extractIndels
IndelRealignmentTarget
extractLengthMap
GenomicRegionPartitioner
extractMatches
IndelRealignmentTarget
extractMismatches
IndelRealignmentTarget
extras
CovariateKey
CovariateSpace