FORMAT_KEYS
VariantAnnotationConverter
FieldEnumeration
projections
FieldValue
projections
FileLocator
util
Filter
projections
FlagStat
rdd
FlagStatMetrics
rdd
Float
TagType
failedQuality
FlagStatMetrics
failedVendorQualityChecks
ADAMRecordField
file
LocalFileLocator
filter
VCFLine
ParsedFilter
MultiContigNonoverlappingRegions
filterStringRegex
BucketComparisons
filters
metrics
CombinedFilter
find
ComparisonTraversalEngine
RegExp
findComparison
DefaultComparisons
findFiles
ADAMContext
findOverlappingRegions
NonoverlappingRegions
findTargets
RealignmentTargetFinder
firstOfPair
ADAMRecordField
fivePrime
ReferencePosition
ReferencePositionWithOrientation
fivePrimePosition
RichADAMRecord
foreach
IntervalListReader
ParquetFileTraversable
PileupTraversable
format
VCFLine
formatHeaderLines
VariantAnnotationConverter
format_csv
GenotypesSummaryFormatting
format_human_readable
GenotypesSummaryFormatting
fragmentNumber
ADAMNucleotideContigFragmentField
fragmentSequence
ADAMNucleotideContigFragmentField
fragmentStartPosition
ADAMNucleotideContigFragmentField
fromADAMContig
SequenceRecord
fromADAMContigFragment
SequenceRecord
fromADAMRecord
SequenceRecord
fromErrorProbability
QualityScore
fromSAMHeader
RecordGroupDictionary
SequenceDictionary
fromSAMReader
RecordGroupDictionary
SequenceDictionary
fromSAMSequenceDictionary
SequenceDictionary
fromSAMSequenceRecord
SequenceRecord
fromSpecificRecord
SequenceRecord