VARIANT
ConcordanceTable
VCF2DatabaseAnnotations
VariantAnnotationConverter
VCF2GenotypeAnnotations
VariantAnnotationConverter
VCF2VariantCallingAnnotations
VariantAnnotationConverter
VCFLine
converters
VCFLineConverter
converters
VCFLineParser
converters
Value
AbstractCovariate
Covariate
VariantAnnotationConverter
converters
VariantCallingAnnotationsField
projections
VariantContextConverter
converters
VariantCounts
GenotypesSummaryCounts
VcfHeaderUtils
util
VcfStringUtils
util
value
ParsedFilter
Attribute
valueAsBoolean
ParsedFilter
valueAsDouble
ParsedFilter
valueAsInt
ParsedFilter
valueAsLong
ParsedFilter
valueAsPoint
ParsedFilter
valueToCount
Histogram
values
Collection
AggregatedCollection
UniqueWritable
variant
ADAMVariantContext
ADAMDatabaseVariantAnnotationField
ADAMGenotypeField
RichADAMVariant
variantAllele
ADAMVariantField
variantCallErrorProbability
VariantCallingAnnotationsField
variantCallingAnnotations
ADAMGenotypeField
variantFilters
VariantCallingAnnotationsField
variantGenotypesCount
GenotypesSummaryCounts
variantIsPassing
VariantCallingAnnotationsField
variantQualityByDepth
VariantCallingAnnotationsField
variantToRichVariant
RichADAMVariant
variation
projections
rdd
vcfKey
AttrKey
vcfListToDoubles
VcfStringUtils
vcfListToInts
VcfStringUtils
vqslod
VariantCallingAnnotationsField