org.bdgenomics.adam.algorithms.realignmenttarget

SNPRange

case class SNPRange(snpSite: Long, readRange: NumericRange[Long]) extends GenericRange with Ordered[SNPRange] with Product with Serializable

Linear Supertypes
Serializable, Serializable, Product, Equals, Ordered[SNPRange], Comparable[SNPRange], GenericRange, AnyRef, Any
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Inherited
  1. SNPRange
  2. Serializable
  3. Serializable
  4. Product
  5. Equals
  6. Ordered
  7. Comparable
  8. GenericRange
  9. AnyRef
  10. Any
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Instance Constructors

  1. new SNPRange(snpSite: Long, readRange: NumericRange[Long])

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. def <(that: SNPRange): Boolean

    Definition Classes
    Ordered

  5. def <=(that: SNPRange): Boolean

    Definition Classes
    Ordered

  6. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  7. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  8. def >(that: SNPRange): Boolean

    Definition Classes
    Ordered

  9. def >=(that: SNPRange): Boolean

    Definition Classes
    Ordered

  10. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  11. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  12. def compare(other: SNPRange): Int

    Definition Classes
    SNPRange → Ordered

  13. def compareRange(other: GenericRange): Int

    Definition Classes
    SNPRange → GenericRange

  14. def compareReadRange(other: GenericRange): Int

    Definition Classes
    GenericRange

  15. def compareTo(that: SNPRange): Int

    Definition Classes
    Ordered → Comparable

  16. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  17. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  18. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  19. def getReadRange(): NumericRange[Long]

    Definition Classes
    GenericRange

  20. def getSNPSite(): Long

  21. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  22. def merge(sr: GenericRange): SNPRange

    Merge two identical SNP sites.

    Merge two identical SNP sites.

    sr

    SNP range to merge in.

    returns

    Merged SNP range.

    Definition Classes
    SNPRange → GenericRange

  23. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  24. final def notify(): Unit

    Definition Classes
    AnyRef

  25. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  26. val readRange: NumericRange[Long]

    Definition Classes
    SNPRange → GenericRange

  27. val snpSite: Long

  28. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  29. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  30. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  31. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

Inherited from Serializable

Inherited from Serializable

Inherited from Product

Inherited from Equals

Inherited from Ordered[SNPRange]

Inherited from Comparable[SNPRange]

Inherited from GenericRange

Inherited from AnyRef

Inherited from Any

Ungrouped