Instance Constructors
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new
SmithWatermanConstantGapScoring(xSequence: String, ySequence: String, wMatch: Double, wMismatch: Double, wInsert: Double, wDelete: Double)
Abstract Value Members
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abstract
def
trackback(): (Cigar, Cigar, String, String)
Concrete Value Members
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final
def
!=(arg0: AnyRef): Boolean
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final
def
!=(arg0: Any): Boolean
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final
def
##(): Int
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final
def
==(arg0: AnyRef): Boolean
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final
def
==(arg0: Any): Boolean
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lazy val
alignmentX: String
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lazy val
alignmentY: String
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final
def
asInstanceOf[T0]: T0
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def
buildScoringMatrix(): Array[Array[Double]]
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lazy val
cigarX: Cigar
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lazy val
cigarY: Cigar
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def
clone(): AnyRef
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final
def
eq(arg0: AnyRef): Boolean
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def
equals(arg0: Any): Boolean
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def
finalize(): Unit
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final
def
getClass(): Class[_]
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def
hashCode(): Int
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final
def
isInstanceOf[T0]: Boolean
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var
max: Double
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var
maxX: Int
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var
maxY: Int
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final
def
ne(arg0: AnyRef): Boolean
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final
def
notify(): Unit
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final
def
notifyAll(): Unit
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lazy val
scoringMatrix: Array[Array[Double]]
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final
def
synchronized[T0](arg0: ⇒ T0): T0
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def
toString(): String
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final
def
wait(): Unit
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final
def
wait(arg0: Long, arg1: Int): Unit
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final
def
wait(arg0: Long): Unit
Inherited from AnyRef
Inherited from Any
