ADAMRecordConverter

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8. def convert(adamRecord: ADAMRecord, header: SAMFileHeaderWritable): SAMRecord

   Converts a single ADAM record into a SAM record.

   Converts a single ADAM record into a SAM record.

   adamRecord

   ADAM formatted alignment record to convert.

   header

   SAM file header to use.

   returns

   Returns the record converted to SAMtools format. Can be used for output to SAM/BAM.

9. def createSAMHeader(sd: SequenceDictionary, rgd: RecordGroupDictionary): SAMFileHeader

   Creates a SAM formatted header.

   Creates a SAM formatted header. This can be used with SAM or BAM files.

   sd

   Reference sequence dictionary to use for conversion.

   rgd

   Dictionary containing record groups.

   returns

   Converted SAM formatted record.

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