org.bdgenomics.adam.projections

ADAMRecordField

object ADAMRecordField extends FieldEnumeration

This enumeration exist in order to reduce typo errors in the code. It needs to be kept in sync with any changes to ADAMRecord.

This enumeration is necessary because Parquet needs the field string names for predicates and projections.

Linear Supertypes
FieldEnumeration, Enumeration, Serializable, Serializable, AnyRef, Any
Ordering
  1. Alphabetic
  2. By inheritance
Inherited
  1. ADAMRecordField
  2. FieldEnumeration
  3. Enumeration
  4. Serializable
  5. Serializable
  6. AnyRef
  7. Any
  1. Hide All
  2. Show all
Learn more about member selection
Visibility
  1. Public
  2. All

Type Members

  1. class SchemaVal extends Val with FieldValue

    Definition Classes
    FieldEnumeration

  2. class Val extends Value with Serializable

    Attributes
    protected
    Definition Classes
    Enumeration
    Annotations
    @SerialVersionUID( -3501153230598116017L )

  3. abstract class Value extends Ordered[Value] with Serializable

    Definition Classes
    Enumeration
    Annotations
    @SerialVersionUID( 7091335633555234129L )

  4. class ValueSet extends AbstractSet[Value] with SortedSet[Value] with SortedSetLike[Value, ValueSet] with Serializable

    Definition Classes
    Enumeration

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def SchemaValue: SchemaVal

    Attributes
    protected
    Definition Classes
    FieldEnumeration

  7. final def Value(i: Int, name: String): Value

    Attributes
    protected
    Definition Classes
    Enumeration

  8. final def Value(name: String): Value

    Attributes
    protected
    Definition Classes
    Enumeration

  9. final def Value(i: Int): Value

    Attributes
    protected
    Definition Classes
    Enumeration

  10. final def Value: Value

    Attributes
    protected
    Definition Classes
    Enumeration

  11. final def apply(x: Int): Value

    Definition Classes
    Enumeration

  12. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  13. val attributes: SchemaVal

  14. val cigar: SchemaVal

  15. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  16. val contig: SchemaVal

  17. val duplicateRead: SchemaVal

  18. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  19. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  20. val failedVendorQualityChecks: SchemaVal

  21. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  22. val firstOfPair: SchemaVal

  23. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  24. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  25. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  26. val mapq: SchemaVal

  27. val mateAlignmentStart: SchemaVal

  28. val mateContig: SchemaVal

  29. val mateMapped: SchemaVal

  30. val mateNegativeStrand: SchemaVal

  31. final def maxId: Int

    Definition Classes
    Enumeration

  32. val mismatchingPositions: SchemaVal

  33. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  34. var nextId: Int

    Attributes
    protected
    Definition Classes
    Enumeration

  35. var nextName: Iterator[String]

    Attributes
    protected
    Definition Classes
    Enumeration

  36. final def notify(): Unit

    Definition Classes
    AnyRef

  37. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  38. val origQual: SchemaVal

  39. val primaryAlignment: SchemaVal

  40. val properPair: SchemaVal

  41. val qual: SchemaVal

  42. val readMapped: SchemaVal

  43. val readName: SchemaVal

  44. val readNegativeStrand: SchemaVal

  45. val readPaired: SchemaVal

  46. def readResolve(): AnyRef

    Attributes
    protected
    Definition Classes
    Enumeration

  47. val recordGroupDescription: SchemaVal

  48. val recordGroupFlowOrder: SchemaVal

  49. val recordGroupId: SchemaVal

  50. val recordGroupKeySequence: SchemaVal

  51. val recordGroupLibrary: SchemaVal

  52. val recordGroupName: SchemaVal

  53. val recordGroupPlatform: SchemaVal

  54. val recordGroupPlatformUnit: SchemaVal

  55. val recordGroupPredictedMedianInsertSize: SchemaVal

  56. val recordGroupRunDateEpoch: SchemaVal

  57. val recordGroupSample: SchemaVal

  58. val recordGroupSequencingCenter: SchemaVal

  59. val recordSchema: Schema

    Definition Classes
    FieldEnumeration

  60. val secondOfPair: SchemaVal

  61. val sequence: SchemaVal

  62. val start: SchemaVal

  63. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
    AnyRef

  64. def toString(): String

    Definition Classes
    Enumeration → AnyRef → Any

  65. def values: ValueSet

    Definition Classes
    Enumeration

  66. final def wait(): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  67. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  68. final def wait(arg0: Long): Unit

    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  69. final def withName(s: String): Value

    Definition Classes
    Enumeration

Inherited from FieldEnumeration

Inherited from Enumeration

Inherited from Serializable

Inherited from Serializable

Inherited from AnyRef

Inherited from Any

Ungrouped