org.bdgenomics.adam.rdd

variation

package variation

Visibility
  1. Public
  2. All

Type Members

  1. class ADAMGenotypeRDDFunctions extends Serializable with Logging

  2. class ADAMVCFOutputFormat[K] extends KeyIgnoringVCFOutputFormat[K]

    Wrapper for Hadoop-BAM to work around requirement for no-args constructor.

  3. class ADAMVariantContextRDDFunctions extends ADAMSequenceDictionaryRDDAggregator[ADAMVariantContext]

  4. class ADAMVariationContext extends Serializable with Logging

  5. class ConcordanceTable extends AnyRef

    Helper class for maintaining the genotype concordance table and computing the relevant metrics.

Value Members

  1. object ADAMVCFOutputFormat

  2. object ADAMVariationContext extends Serializable

  3. object ConcordanceTable

Ungrouped