G
Base
GENBANK_TAG
SequenceRecord
GZIP
CompressionCodecEnum
GeneratedType
ComparisonTraversalEngine
GeneratorFilter
filters
GenomicRegionPartitioner
rdd
GenotypeAlleleCounts
GenotypesSummaryCounts
GenotypeRecordPASSPredicate
predicates
GenotypesSummary
rdd
GenotypesSummaryCounts
rdd
GenotypesSummaryFormatting
rdd
genbank
SequenceRecord
geneSymbol
ADAMDatabaseVariantAnnotationField
generate
ComparisonTraversalEngine
generateAlternateConsensus
Consensus
genotype
RichADAMGenotype
genotypeLikelihoods
ADAMFlatGenotypeField
ADAMGenotypeField
genotypeQuality
ADAMFlatGenotypeField
ADAMGenotypeField
genotypeToRichGenotype
RichADAMGenotype
genotypes
ADAMVariantContext
genotypesCount
GenotypesSummaryCounts
genotypesCounts
GenotypesSummaryCounts
gerpNr
ADAMDatabaseVariantAnnotationField
gerpRs
ADAMDatabaseVariantAnnotationField
get
DNAPrefixTrie
ConcordanceTable
getAWSAccessKeyId
SerializableAWSCredentials
getAWSSecretKey
SerializableAWSCredentials
getConfig
ServoTimer
getCount
ServoTimer
getCurrentRecord
UsableAvroRecordMaterializer
getHadoopCodec
CompressionCodecEnum
getHeader
ADAMVCFOutputFormat
getHostTimings
TaskTimer
getIfExists
DNAPrefixTrie
getIndelsInRegion
IndelTable
getIndex
RecordGroupDictionary
getLength
RichCigar
getMax
ServoTimer
getMean
ServoTimer
getMin
ServoTimer
getMonitors
ServoTimer
getName
ServoTimer
getOrElse
DNAPrefixTrie
getOverallTimings
TaskTimer
getPageReader
PartitionPageReadStore
getPartition
GenomicRegionPartitioner
getPartitions
AvroIndexedParquetRDD
AvroParquetRDD
getReference
MdTag
getReferenceContext
RichADAMRecord
getReferenceName
ReferenceMapping
ADAMFlatGenotypeReferenceMapping
ADAMRecordReferenceMapping
ReferenceRegionReferenceMapping
getReferenceRegion
ReferenceMapping
ADAMFlatGenotypeReferenceMapping
ADAMRecordReferenceMapping
ReferenceRegionReferenceMapping
getRootConverter
UsableAvroRecordMaterializer
getRowCount
PartitionPageReadStore
getRowGroup
RowGroupIndexEntry
getSequenceRecordsFromElement
ADAMNucleotideContigFragmentRDDFunctions
ADAMRecordRDDFunctions
ADAMSequenceDictionaryRDDAggregator
ADAMSpecificRecordSequenceDictionaryRDDAggregator
ADAMVariantContextRDDFunctions
getStageTimings
TaskTimer
getTotalTime
ServoTimer
getType
RichADAMGenotype
getValue
ServoTimer
globalTable
RecalibrationTable
groupFields
ParquetGroupType
groupName
ParquetGroupType
groupRepetition
ParquetGroupType