IDAndRangeSet
IDRangeIndexGenerator
IDRangeIndex
index
IDRangeIndexEntry
index
IDRangeIndexGenerator
index
IDRangeIndexPredicate
index
IDRangeIndexWriter
index
ILLUMINA_READNAME_REGEX
RichAlignmentRecord
INFO_KEYS
VariantAnnotationConverter
INT32
PrimitiveType
INT64
PrimitiveType
INT96
PrimitiveType
IlluminaOptics
rich
ImplicitJavaConversions
util
IndelRealignmentTarget
realignmenttarget
IndelTable
models
IndexEntryPredicate
index
InequalityFilter
BucketComparisons
InputStreamWithDecoder
serialization
InsertionEvent
util
Integer
TagType
InterleavedFastqInputFormat
io
Interval
models
IntervalListReader
util
id
VCFLine
IDRangeIndexEntry
idRanges
IDRangeIndexGenerator
idSet
IDAndRangeSet
illuminaOptics
RichAlignmentRecord
in
AvroSerializer
inbreedingCoefficient
VariantCallingAnnotationsField
indelTable
ConsensusGeneratorFromKnowns
index
Consensus
ParquetPartition
parquet_reimpl
indexPageOffset
ParquetColumnChunk
indexPredicate
CombinedFilter
FilterTuple
indexPredicates
AndIndexPredicate
OrIndexPredicate
info
VCFLine
infoHeaderLines
VariantAnnotationConverter
initialValue
Aggregator
CombinedAggregator
HistogramAggregator
UniqueAggregator
input
BaseQualityRecalibration
insertIntoReference
Consensus
insertedSequence
InsertionEvent
insertionCount
GenotypesSummaryCounts
insertions
Pileup
instrumentation
adam
intListToJavaIntegerList
ADAMContext
ImplicitJavaConversions
intersection
ReferenceRegion
io
adam
AvroParquetRDD
isAdjacent
ReferenceRegion
isAligned
DecadentRead
isCanonicalRecord
DecadentRead
isCompatibleWith
SequenceDictionary
isDeletion
RichVariant
isDirectory
HadoopUtil
isDuplicate
DecadentRead
isEmpty
IndelRealignmentTarget
isFalse
PredicateUtils
isFirstOfPair
DecadentRead
isHighQuality
AlignmentRecordConditions
isInsertion
Residue
RichVariant
isMapped
AlignmentRecordConditions
isMasked
SnpTable
isMatch
MdTag
isMismatch
Residue
isMismatchAtReadOffset
RichAlignmentRecord
isMismatchAtReferencePosition
RichAlignmentRecord
isMultipleNucleotideVariant
RichVariant
isNegativeRead
DecadentRead
isPaired
DecadentRead
isPassing
GenotypeConditions
isPhased
GenotypeField
isPrimaryAlignment
AlignmentRecordConditions
DecadentRead
isRegularBase
Residue
isReverseStrand
MatchEvent
MismatchEvent
isSNP
Residue
isSameContig
Util
isSecondOfPair
DecadentRead
isSingleNucleotideVariant
RichVariant
isSingleSample
Rod
isTrue
PredicateUtils
isUnique
AlignmentRecordConditions
isWellFormed
RichCigar
itemRgb
BEDFeature
FeatureField
iterableToJavaCollection
ADAMContext