MAGIC
ParquetCommon
MAP
ParquetOriginalType
MAP_KEY_VALUE
ParquetOriginalType
MapQualityScores
metrics
MapTools
util
MappedPosition
metrics
Match
MdTagEvent
MatchEvent
util
MaxTag
ServoTimer
MdTag
util
MdTagEvent
util
MeanTag
ServoTimer
MinTag
ServoTimer
Mismatch
MdTagEvent
MismatchEvent
util
MonitorTable
instrumentation
MultiContigNonoverlappingRegions
rdd
MyConverter
converter
main
PhredUtils
makeHeader
VcfHeaderUtils
mapQ
DeletionEvent
InsertionEvent
MatchEvent
MismatchEvent
mapStageIdToName
SparkMetrics
mapToJavaMap
ADAMContext
mapped
FlagStatMetrics
mappedPositionCheck
ReferencePosition
mapping
OrderedTrackedLayout
mapq
AlignmentRecordField
mapq0Reads
VariantCallingAnnotationsField
matchedByName
BaseQualityScores
BucketComparisons
CombinedComparisons
DupeMismatch
MapQualityScores
MappedPosition
OverMatched
matches
OverMatched
MdTag
Pileup
RegExp
matchesQueryIds
IDRangeIndexPredicate
matchesQueryRange
IDRangeIndexPredicate
mateAlignmentStart
AlignmentRecordField
mateContig
AlignmentRecordField
mateMapped
AlignmentRecordField
mateNegativeStrand
AlignmentRecordField
materialize
ParquetLister
materializeRecords
ParquetPartition
maxDef
ParquetColumnDescriptor
maxLogP
RecalibrationTable
maxQualScore
RecalibrationTable
maxRep
ParquetColumnDescriptor
md5
SequenceRecord
mdTag
RichAlignmentRecord
merge
IndelRealignmentTarget
ReferenceRegion
mergeAnnotations
VariantAnnotationConverter
mergeRegions
NonoverlappingRegions
metadata
ParquetFileMetadata
metrics
adam
minAcceptableQuality
BaseQualityRecalibration
Recalibrator
mismatchedBase
MdTag
MismatchEvent
mismatches
Observation
DecadentRead
MdTag
Pileup
mismatchesOption
DecadentRead
mismatchingPositions
AlignmentRecordField
models
adam
moveAlignment
MdTag
moveLeft
RichCigar
moveMatrix
SmithWaterman
mqRankSum
VariantCallingAnnotationsField
multipleNucleotideVariantCount
GenotypesSummaryCounts
mutationTasterPred
DatabaseVariantAnnotationField
mutationTasterScore
DatabaseVariantAnnotationField
mutationTasterScoreConverted
DatabaseVariantAnnotationField