VARIANT
ConcordanceTable
VCF2DatabaseAnnotations
VariantAnnotationConverter
VCF2GenotypeAnnotations
VariantAnnotationConverter
VCF2VariantCallingAnnotations
VariantAnnotationConverter
VCFLine
converters
VCFLineConverter
converters
VCFLineParser
converters
Value
AbstractCovariate
Covariate
ValueExtractor
instrumentation
VariantAnnotationConverter
converters
VariantCallingAnnotationsField
projections
VariantContext
models
VariantContextConverter
converters
VariantContextRDDFunctions
variation
VariantCounts
GenotypesSummaryCounts
VariantField
projections
VcfHeaderUtils
util
VcfStringUtils
util
value
ParsedFilter
Attribute
FeatureField
valueAsBoolean
ParsedFilter
valueAsDouble
ParsedFilter
valueAsInt
ParsedFilter
valueAsLong
ParsedFilter
valueAsPoint
ParsedFilter
valueExtractor
TableHeader
valueToCount
Histogram
values
Collection
AggregatedCollection
UniqueWritable
variant
VariantContext
DatabaseVariantAnnotationField
GenotypeField
RichVariant
variantAllele
VariantField
variantCallErrorProbability
VariantCallingAnnotationsField
variantCallingAnnotations
GenotypeField
variantFilters
VariantCallingAnnotationsField
variantGenotypesCount
GenotypesSummaryCounts
variantIsPassing
VariantCallingAnnotationsField
variantQualityByDepth
VariantCallingAnnotationsField
variantToRichVariant
RichVariant
variation
IndelRealignmentTarget
rdd
vcfKey
AttrKey
vcfListToDoubles
VcfStringUtils
vcfListToInts
VcfStringUtils
vqslod
VariantCallingAnnotationsField