org.bdgenomics.adam

converters

package converters

Visibility
  1. Public
  2. All

Type Members

  1. class AlignmentRecordConverter extends Serializable

  2. case class AttrKey(adamKey: String, attrConverter: (AnyRef) ⇒ AnyRef, hdrLine: VCFCompoundHeaderLine) extends Product with Serializable

  3. class SAMRecordConverter extends Serializable

  4. class VCFLine extends AnyRef

  5. class VCFLineParser extends Iterator[VCFLine]

    VCFLineParser is a line-by-line (streaming) parser for VCF files, written specifically to support light-weight creation of FlatGenotype records from large (multi-Gb, gzipped) VCF files.

  6. class VariantContextConverter extends Serializable

    This class converts VCF data to and from ADAM.

Value Members

  1. object AttrKey extends Serializable

  2. object VCFLineConverter

  3. object VariantAnnotationConverter extends Serializable

  4. object VariantContextConverter extends Serializable

Ungrouped