org.bdgenomics.adam.parquet_reimpl.index

IDRangeIndex

class IDRangeIndex extends RowGroupIndex[IDRangeIndexEntry]

And identifier-range index is an index on both genomic ranges and sample identifiers simultaneously -- a pair of (sample-identifier, genomic-range) is associated with a single row group of a Parquet file in a single IDRangeIndexEntry, and a set of IDRangeIndexEntry values are collected (in memory) into an IDRangeIndex.

Linear Supertypes
RowGroupIndex[IDRangeIndexEntry], AnyRef, Any
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  1. IDRangeIndex
  2. RowGroupIndex
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Instance Constructors

  1. new IDRangeIndex(io: FileLocator)

  2. new IDRangeIndex(io: ByteAccess)

  3. new IDRangeIndex(file: File)

  4. new IDRangeIndex(is: InputStream)

  5. new IDRangeIndex(itr: Iterable[IDRangeIndexEntry])

  6. new IDRangeIndex(itr: Iterator[IDRangeIndexEntry])

  7. new IDRangeIndex(entries: Array[IDRangeIndexEntry])

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  7. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( ... )

  8. val entries: Array[IDRangeIndexEntry]

  9. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  10. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  11. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  12. def findIndexEntries(predicate: IndexEntryPredicate[IDRangeIndexEntry]): Iterable[IDRangeIndexEntry]

    Definition Classes
    IDRangeIndex → RowGroupIndex

  13. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  14. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  15. final def isInstanceOf[T0]: Boolean

    Definition Classes
    Any

  16. final def ne(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  17. final def notify(): Unit

    Definition Classes
    AnyRef

  18. final def notifyAll(): Unit

    Definition Classes
    AnyRef

  19. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
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  20. def toString(): String

    Definition Classes
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  21. final def wait(): Unit

    Definition Classes
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    @throws( ... )

  22. final def wait(arg0: Long, arg1: Int): Unit

    Definition Classes
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    @throws( ... )

  23. final def wait(arg0: Long): Unit

    Definition Classes
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    @throws( ... )

Inherited from RowGroupIndex[IDRangeIndexEntry]

Inherited from AnyRef

Inherited from Any

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