org.bdgenomics.adam.parquet_reimpl.index

IDRangeIndexGenerator

class IDRangeIndexGenerator[T <: IndexedRecord] extends Logging

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Instance Constructors

  1. new IDRangeIndexGenerator(idAccessor: (T) ⇒ String, indexableSchema: Option[Schema] = scala.None)(implicit referenceFolder: ReferenceFolder[T], classTag: ClassTag[T])

Type Members

  1. class IDAndRangeSet extends AnyRef

Value Members

  1. final def !=(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  2. final def !=(arg0: Any): Boolean

    Definition Classes
    Any

  3. final def ##(): Int

    Definition Classes
    AnyRef → Any

  4. final def ==(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  5. final def ==(arg0: Any): Boolean

    Definition Classes
    Any

  6. def addParquetFile(rootLocator: FileLocator, relativePath: String): Iterator[IDRangeIndexEntry]

  7. def addParquetFile(fullPath: String): Iterator[IDRangeIndexEntry]

  8. final def asInstanceOf[T0]: T0

    Definition Classes
    Any

  9. val avroSchema: Schema

  10. def clone(): AnyRef

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
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    @throws( ... )

  11. def convertAvroSchema(schema: Option[Schema], fileMessageType: MessageType): MessageType

    TODO: Need to replace this (and identical implementatoins in other classes) with a single implementation.

  12. final def eq(arg0: AnyRef): Boolean

    Definition Classes
    AnyRef

  13. def equals(arg0: Any): Boolean

    Definition Classes
    AnyRef → Any

  14. val filter: UnboundRecordFilter

  15. def finalize(): Unit

    Attributes
    protected[java.lang]
    Definition Classes
    AnyRef
    Annotations
    @throws( classOf[java.lang.Throwable] )

  16. def folder(folded: IDAndRangeSet, value: T): IDAndRangeSet

  17. final def getClass(): Class[_]

    Definition Classes
    AnyRef → Any

  18. def hashCode(): Int

    Definition Classes
    AnyRef → Any

  19. def idRanges(rowGroup: ParquetRowGroup, io: ByteAccess, materializer: RecordMaterializer[T], reqSchema: ParquetSchemaType, actualSchema: ParquetSchemaType): (Seq[String], Seq[ReferenceRegion])

  20. final def isInstanceOf[T0]: Boolean

    Definition Classes
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  21. def isTraceEnabled(): Boolean

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    protected
    Definition Classes
    Logging

  22. def log: Logger

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    protected
    Definition Classes
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  23. def logDebug(msg: ⇒ String, throwable: Throwable): Unit

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    Definition Classes
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  24. def logDebug(msg: ⇒ String): Unit

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    Definition Classes
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  25. def logError(msg: ⇒ String, throwable: Throwable): Unit

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    Definition Classes
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  26. def logError(msg: ⇒ String): Unit

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  27. def logInfo(msg: ⇒ String, throwable: Throwable): Unit

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  28. def logInfo(msg: ⇒ String): Unit

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  29. def logTrace(msg: ⇒ String, throwable: Throwable): Unit

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    protected
    Definition Classes
    Logging

  30. def logTrace(msg: ⇒ String): Unit

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    protected
    Definition Classes
    Logging

  31. def logWarning(msg: ⇒ String, throwable: Throwable): Unit

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    Definition Classes
    Logging

  32. def logWarning(msg: ⇒ String): Unit

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    Definition Classes
    Logging

  33. final def ne(arg0: AnyRef): Boolean

    Definition Classes
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  34. final def notify(): Unit

    Definition Classes
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  35. final def notifyAll(): Unit

    Definition Classes
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  36. final def synchronized[T0](arg0: ⇒ T0): T0

    Definition Classes
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  37. def toString(): String

    Definition Classes
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  38. final def wait(): Unit

    Definition Classes
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    @throws( ... )

  39. final def wait(arg0: Long, arg1: Int): Unit

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    @throws( ... )

  40. final def wait(arg0: Long): Unit

    Definition Classes
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    @throws( ... )

Inherited from Logging

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