ADAMContext

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1. final def !=(arg0: AnyRef): Boolean

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2. final def !=(arg0: Any): Boolean

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3. final def ##(): Int

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4. final def ==(arg0: AnyRef): Boolean

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5. final def ==(arg0: Any): Boolean

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6. final def asInstanceOf[T0]: T0

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7. implicit def charSequenceToList(cs: CharSequence): List[Char]

8. implicit def charSequenceToString(cs: CharSequence): String

9. def clone(): AnyRef

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10. def createSparkContext(name: String, master: String, sparkHome: String = null, sparkJars: Seq[String] = Nil, sparkEnvVars: Seq[(String, String)] = Nil, sparkAddStatsListener: Boolean = false, sparkKryoBufferSize: Int = 4, sparkMetricsListener: Option[ADAMMetricsListener] = None, loadSystemValues: Boolean = true, sparkDriverPort: Option[Int] = None): SparkContext

    Creates a SparkContext that is configured for use with ADAM.

    Creates a SparkContext that is configured for use with ADAM. Applies default serialization settings.

    name

    Context name.

    master

    URL for master.

    sparkHome

    Path to Spark.

    sparkJars

    JAR files to import into context.

    sparkEnvVars

    Environment variables to set.

    sparkAddStatsListener

    Disabled by default; true enables. If enabled, a job status listener is registered. This can be useful for performance debug.

    sparkKryoBufferSize

    Size of the object serialization buffer. Default setting is 4MB.

    sparkMetricsListener

    A listener for recording metrics from Spark. Defaults to None

    returns

    Returns a properly configured Spark Context.

11. final def eq(arg0: AnyRef): Boolean

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12. def equals(arg0: Any): Boolean

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13. def finalize(): Unit

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14. final def getClass(): Class[_]

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15. def hashCode(): Int

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16. implicit def intListToJavaIntegerList(list: List[Int]): List[Integer]

17. final def isInstanceOf[T0]: Boolean

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18. implicit def iterableToJavaCollection[A](i: Iterable[A]): Collection[A]

19. implicit def javaListToList[A](list: List[A]): List[A]

20. implicit def javaMapToMap[A, B](map: Map[A, B]): Map[A, B]

21. implicit def javaSetToSet[A](set: Set[A]): Set[A]

22. implicit def listToJavaList[A](list: List[A]): List[A]

23. implicit def mapToJavaMap[A, B](map: Map[A, B]): Map[A, B]

24. final def ne(arg0: AnyRef): Boolean

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25. final def notify(): Unit

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26. final def notifyAll(): Unit

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27. implicit def rddToADAMPileupRDD(rdd: RDD[Pileup]): PileupRDDFunctions

28. implicit def rddToADAMRDD(rdd: RDD[NucleotideContigFragment]): NucleotideContigFragmentRDDFunctions

29. implicit def rddToADAMRDD[T](rdd: RDD[T])(implicit arg0: (T) ⇒ SpecificRecord, arg1: Manifest[T]): ADAMRDDFunctions[T]

30. implicit def rddToADAMRecordRDD(rdd: RDD[AlignmentRecord]): AlignmentRecordRDDFunctions

31. implicit def rddToRodRDD(rdd: RDD[Rod]): RodRDDFunctions

32. implicit def recordToRichRecord(record: AlignmentRecord): RichAlignmentRecord

33. implicit def setToJavaSet[A](set: Set[A]): Set[A]

34. implicit def sparkContextToADAMContext(sc: SparkContext): ADAMContext

35. final def synchronized[T0](arg0: ⇒ T0): T0

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36. def toString(): String

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37. final def wait(): Unit

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38. final def wait(arg0: Long, arg1: Int): Unit

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39. final def wait(arg0: Long): Unit

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