org.bdgenomics.adam.rdd

variation

package variation

Visibility
  1. Public
  2. All

Type Members

  1. class ADAMVCFOutputFormat[K] extends KeyIgnoringVCFOutputFormat[K]

    Wrapper for Hadoop-BAM to work around requirement for no-args constructor.

  2. class ADAMVariationContext extends Serializable with Logging

  3. class ConcordanceTable extends AnyRef

    Helper class for maintaining the genotype concordance table and computing the relevant metrics.

  4. class GenotypeRDDFunctions extends Serializable with Logging

  5. class VariantContextRDDFunctions extends ADAMSequenceDictionaryRDDAggregator[VariantContext]

Value Members

  1. object ADAMVCFOutputFormat

  2. object ADAMVariationContext extends Serializable

  3. object ConcordanceTable

Ungrouped